Gene Coch_1601 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1601 
Symbol 
ID8368047 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand- 
Start bp1910431 
End bp1911483 
Gene Length1053 bp 
Protein Length350 aa 
Translation table11 
GC content41% 
IMG OID644984041 
Productbranched-chain amino acid aminotransferase 
Protein accessionYP_003141707 
Protein GI256820428 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 
TIGRFAM ID[TIGR01123] branched-chain amino acid aminotransferase, group II 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTTAA AGATTGAAAA AGTAAAAGAA AGTCGTATTA ACCAGATAGA CTTTTCAAAA 
CTGAGTTTTG GTAAAACTTT TGCTGACCAT ATGTTCATCT GTGAATACAA AGATGGACAG 
TGGCAAAACC CAACCATCAA ACCTTATGCT CCTATAACCC TTGAGCCTTC AGCAAGCGTA 
TTTCACTACG GACAAGCTGT TTTTGAGGGA ATGAAAGCTT ATAAGGACGA CAACGGACAC 
GTTTTTCTAT TCCGTCCGCA AGAAAACTAC AAACGTATCA ATAAATCCTG CTCACGCTTG 
GCAATGCCTG AGTTTCCTGA AGAATGGTTT GACCAAGCTC TCCGTACTCT TGTAGATATT 
GATAGTGAGT GGATAAAACC CGGATTTGGC AATGCCCTCT ATTTGCGCCC ATTTATGATT 
GCTACTACTG CTGGCGTACA AGCGGCTCCT GCTAAAAACT ACCTCTTTAT GATTATTACT 
GCCCCTGTAC AAGCTTATTA CAAAGGCGAT GTAAAAGTAA AAATAGCAGA CTATTATAGC 
CGTGCTGCTA ATGGAGGTTT TGGTTTTGCT AAAGCAGCAG GTAACTACGC AGGTCAGTTT 
TTCCCTACCC AAGAAGCTGC CAATGAAGGT TACCAACAAG TGATGTGGAC AGACGATGCT 
ACACACCAAT TCTTAGAAGA AGCAGGTACA ATGAACCTAT GGTTCCGTTT TGGTGATACC 
CTTGTTACTT GCCCTACCAG TGAGCGTATT CTCGATGGGG TAACTCGTAA AAGTATCATT 
GCAGTAGCCG AAAAATTAGG TATCAAAACC GAAGTACGCC CCGTGAAAGT AACCGAACTT 
ATCGAAGCAT CTGAAAAAGG TGAATTGAAA GAAGCATTTG GTTGTGGAAC GGCAGCTGTG 
ATTAGCCCTA TATCTGGATT TGGCTATAAA GGCAAAGATT ACAGCGTAAA TCGTCCTGCT 
GAATTATATA CCGATAAAAT CAAACAAGCG ATACTTAACA TTCAGTATAA CAAGGCTGAA 
GATCCCTTCG GCTGGAGAGT GCAAGTAAAG TAA
 
Protein sequence
MNLKIEKVKE SRINQIDFSK LSFGKTFADH MFICEYKDGQ WQNPTIKPYA PITLEPSASV 
FHYGQAVFEG MKAYKDDNGH VFLFRPQENY KRINKSCSRL AMPEFPEEWF DQALRTLVDI 
DSEWIKPGFG NALYLRPFMI ATTAGVQAAP AKNYLFMIIT APVQAYYKGD VKVKIADYYS 
RAANGGFGFA KAAGNYAGQF FPTQEAANEG YQQVMWTDDA THQFLEEAGT MNLWFRFGDT 
LVTCPTSERI LDGVTRKSII AVAEKLGIKT EVRPVKVTEL IEASEKGELK EAFGCGTAAV 
ISPISGFGYK GKDYSVNRPA ELYTDKIKQA ILNIQYNKAE DPFGWRVQVK