Gene Coch_1544 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1544 
Symbol 
ID8367988 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp1834566 
End bp1836044 
Gene Length1479 bp 
Protein Length492 aa 
Translation table11 
GC content42% 
IMG OID644983983 
Productprolyl-tRNA synthetase 
Protein accessionYP_003141650 
Protein GI256820371 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0442] Prolyl-tRNA synthetase 
TIGRFAM ID[TIGR00408] prolyl-tRNA synthetase, family I 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.138396 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCAAGA ATTTAACATC ACGCAGTGAA GACTATTCTA AATGGTATAA CGAATTGGTT 
GTAAAAGCCG ATTTAGCCGA AAGTTCAGGC GTGCGTGGCT GTATGGTAAT CAAACCTTAC
GGCTATGCTA TTTGGGAAAA AATGCAAGCA GAACTCGACC GTATGTTTAA AGAAACTGGT
CACACCAATG CTTATTTTCC TTTATTTGTA CCCAAAAGTT ATTTTGAAGC AGAGGAAAAG
AATGCTGAAG GTTTTGCTAA AGAATGTGCC GTAGTAACCC ACTATCGTCT TAAAGCCGAC
CCTAATGAAA AAGGAAAACT AATGGTAGAC CCGGAAGCAA AACTCGAAGA AGAGCTGATA
GTACGTCCTA CCTCAGAGGC AATTATTTGG AACACCTACA AAAACTGGAT ACAGTCTTAC
CGTGATTTGC CTATACTCAT CAACCAATGG GCGAATGTTG TGCGCTGGGA GATGCGCACC
CGTCTATTTC TTCGCACTGC GGAATTCTTG TGGCAAGAAG GACACACCGC TCACGCCACT
AAAGCCGAAG CCATAGAAGA AGCTCAAAAG ATGATGAACG TATATGCTGA CTTTGTAGAG
AACTTTATGG CTGTGCCTGT AATAAAAGGT GTAAAAAGTG AAAGCGAACG CTTTGCAGGG
GCTGACGATA CCTACTGTAT AGAAGCCCTT ATGCAAGATG GAAAAGCACT GCAAGCAGGA
ACATCACACT TCTTAGGACA GAACTTCGCC AAAGCCTTTG ACGTGAAATA TGTGAGCAAA
GAAGGTAAAC AAGAATATGT ATGGGCGAGC TCTTGGGGTG TTTCTACTCG CTTGATGGGA
GCACTCATTA TGACCCACAG CGATGACAAT GGATTAGTAC TTCCTCCTAA ATTGGCTCCT
ATACAAGTGG TAATCGTGCC TATCTACAAA GGAGCTGAAC AATTAGAAAA AGTGCGCTCC
CATATTCAGC CTTTAATTGA AGAACTCAAA AAACACAATA TTAGTGTAAA ATTCGACGAT
CGTGATACAC AGTCTCCTGG CTTTAAGTTC CACGAGTACG AACTCAAAGG GATACCTGTA
CGCTTAGCTG TAGGACAACG CGACATAGAG CACAATACCT TCGAAGTAGC CCGTCGCGAT
ACTCTTACCA AAGAGACAGT AGCTGGTGAC CAAATTGTAG CTCATATTCA GCAGCTTTTA
GAGAATATTC AATCCAATAT GTACAACAAA GCTTTGGAGT ACCGCAATAC CCATATTACC
GAGGTAAATA GCTATGACGA GTTCAAGGAA TTGTTAGAAA CTAAAGGAGG TTTCCTCTCA
GCACACTGGG ATGGTACTCC CGAAACTGAA GAGCGTATCA AAGAAGAGAC CAAAGCAACG
ATACGTTGTA TACCATTGGA TATCAAGGAA GAGTCTGGGT ATTGCATCTA CTCGGGTAAG
CCTTCGAAAA AACGAGTGCT TTTTGCTAAA GCTTATTAA
 
Protein sequence
MSKNLTSRSE DYSKWYNELV VKADLAESSG VRGCMVIKPY GYAIWEKMQA ELDRMFKETG 
HTNAYFPLFV PKSYFEAEEK NAEGFAKECA VVTHYRLKAD PNEKGKLMVD PEAKLEEELI
VRPTSEAIIW NTYKNWIQSY RDLPILINQW ANVVRWEMRT RLFLRTAEFL WQEGHTAHAT
KAEAIEEAQK MMNVYADFVE NFMAVPVIKG VKSESERFAG ADDTYCIEAL MQDGKALQAG
TSHFLGQNFA KAFDVKYVSK EGKQEYVWAS SWGVSTRLMG ALIMTHSDDN GLVLPPKLAP
IQVVIVPIYK GAEQLEKVRS HIQPLIEELK KHNISVKFDD RDTQSPGFKF HEYELKGIPV
RLAVGQRDIE HNTFEVARRD TLTKETVAGD QIVAHIQQLL ENIQSNMYNK ALEYRNTHIT
EVNSYDEFKE LLETKGGFLS AHWDGTPETE ERIKEETKAT IRCIPLDIKE ESGYCIYSGK
PSKKRVLFAK AY