Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_1520 |
Symbol | |
ID | 8367960 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | + |
Start bp | 1806050 |
End bp | 1808521 |
Gene Length | 2472 bp |
Protein Length | 823 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 644983955 |
Product | membrane protein-like protein |
Protein accession | YP_003141626 |
Protein GI | 256820347 |
COG category | [S] Function unknown |
COG ID | [COG5373] Predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.115215 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTATCAG AAAAAGATTT AGAAGCCTTA ATGGCTCAGG TAGATGGTGC TGTGGACAGG CAGTACGACT TCATTAAAGA GATGAAGCAG ATAAAGCAAA CGCTTTGGGA ACTGAAAGCC CAAATGCGTG CTACTTCGGT ATTAAGTTCG GCGGTACCCG CAGAAACGGC AGTGCCTGAG GGTACACGTG AGGCAGTAAC AGAGACTCCC CCTGTGGAAA CGGTAACTCC TGTTGAGGAA CAAACCGTAA TAAATACTGT GGCTGAGGAA ATGACGACAG CTGTTGTAGA GAAGCAAACG GCTGTTGCGG CGGTTGCTGA ACCGGTGCAA GAAACTTCAC AACCGAAACA AGAGACCCCT CCGATTACTT TTACAACAAA AACGAATCCG TTTGCGCCCA AAAAGAAGGT GAGAAATCCG TTTGAGCCGA AGCAACCTAC TAACTGGGAG CGATTTATCG GTGAGAATTT GTTTAGCAAG ATAGGGATAG TGATTATTAT TATTGGGGTG TTTATAGGGG TGAAATACTC TATTCAGCAT AACCTTATCA GCCCTGCAAT GCGCTTGGTT TTAGGTTACT TAATGGGTAT AGGGCTTTTT GTAACGGGAG CTATGCTCAA GAAAAAATAT GAGAGTTTTA GTGCTATCTT GGTGAGTGGA GCAATGACGA TTTTTTATTT CGTCACCTTT ATTGCATATG CTGTTTTTGG TTATTTCCCG CAATCTCTTG CCTTTGTGCT GATGTTCCTC TTTACAGCCT TTACGGTACT TGCTTCGTTG AGCTATAACC AAGTGGTGAT AGCTATTATA GGGCTTGTGG GAGGTTATGC GGTACCTTTT CTTTTGAGTA ATAACTCGGG TCAGGTAGAA ATCTTATTTG CGTATACAGC AATTATTAAT ATAGGTGTGC TGATACTTTC GTTTTATAAG CAATGGCGTT CACTGTACAT TTCGGCGTTG TTCCTCACTT GGCTATTGTT GTTCTCGACG TGGGTATCGG CTTATCAGTA CGACGACTTT GTGCCTTACT TTGTATTTAA TTTGGTAACG TTCCTCACTT TCTATGTTGC TTTTATAGCT CAGAAAATAC ACAGGGTACA GGAATTGGAA GCGGTAGATG TGCTTTTGTT CTTGTTTAGT AGCTTGTCGT TTTACGCGAT GGGTGTTTGG CTTATATTGG ATTATTATCC TAATAATCGG ACTTTTGTGG CGATGTTTAC ATTGCTTAAC GCTGTATTTC ACTTTTTGGT GGGTTATTAT TTTCACCTCA AAAAGGCGCC TTCTCAGGCT TTGAAATACT TAGTTTTGGT GTTGGCACTC TCATTTGCTA CTTTGGTAAT TCCGATACAG TTTAAAGGAA CGTGGATAAC TATCTTCTGG ATAGCCGAAG CTGCGTTACT TTTTGGGTTT GGGCGTACTA AAAAAATGCC TGTGTACGAG CGAATTTCAT ACGCAGTAGC GATTTTGGCT ACTTTCAGTT TGCTGATAGA TTGGGGGAAA GGCTCTTATA GTATCTTTGA TATGGAAGAC GCGAGAGCGT ATATCACGCC TTTTGCTAAC TTGCTCTTTA TTACAGGGTT ACTTTATAGT GTGGCGGTAG GAGCAATGGC TTATATCAAT GATAAATACA AAGAGACAGG GACACTTAAT AAAGTGTTGA GCTTTTTGTT CAATATTTTT TCGGTACTTA TTTTGTATTG CACTTTTTAC AGAGAGATAA GCGTGTTTTG CGATATGAGG GCTTTACATC AAGACCCTGT GATTTACAGC CATTATGAGG CATATCAAGA CTTGAACACT TTTAAAGGGG TATGGCATAT TATATACAGT GTGTTGTTTA TTTCGGCTTA TAGTTTTCTG AATGTGAAGT ACCTGAAAAA GAAATTGTTG GCAGAACTAC AAATAGGCTT AAACTTTTTG TTACTGACTA TATTTATGAC CTTGGGGCTT TACTATTTCA GTGAGTTGCG AGAACGTTAT ATGGAAGAAG TGCAGGAAGG AGGGCAGTTA TCACTTTGGT TTTTAAATAT TAGATATGTG GGTTTGCTCT CGCTGGTGGT ATTAGGCAAT AGCATTTATG CCCTCAGTAA GTTTTTGGAA TTTAAAACAG GGGCAAGGCG TGTATTGGAA ATGTTGTTGC ATCTGGTTAT TTTGTGGGTT GCTAGCAGTG AATTACTGCA CTGGACAGAT ATATATGAAT CGGTAGCTAA TTATAAATTA GGTCTTACAA TTTTATGGGG AGGTTATGCT ATTTTATTGG TAGTATTGGG TATTTTTAAA AGGAAGAAAT ACCAGCGAAT ATCGGGTATT ATATTGGTAG GTTTTACGCT CTTGAAGTTA TTCTTTTACG ATACTACCCA CCTCGATACG CTACATAAGA CCATAGTGTT TGTACTGCTT GGGGTATTGC TACTGGTAGC ATCGTTTCTC TATAACAAAT ATACCAAAGA AATAGAGGGA GAGCAAAAAT AA
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Protein sequence | MVSEKDLEAL MAQVDGAVDR QYDFIKEMKQ IKQTLWELKA QMRATSVLSS AVPAETAVPE GTREAVTETP PVETVTPVEE QTVINTVAEE MTTAVVEKQT AVAAVAEPVQ ETSQPKQETP PITFTTKTNP FAPKKKVRNP FEPKQPTNWE RFIGENLFSK IGIVIIIIGV FIGVKYSIQH NLISPAMRLV LGYLMGIGLF VTGAMLKKKY ESFSAILVSG AMTIFYFVTF IAYAVFGYFP QSLAFVLMFL FTAFTVLASL SYNQVVIAII GLVGGYAVPF LLSNNSGQVE ILFAYTAIIN IGVLILSFYK QWRSLYISAL FLTWLLLFST WVSAYQYDDF VPYFVFNLVT FLTFYVAFIA QKIHRVQELE AVDVLLFLFS SLSFYAMGVW LILDYYPNNR TFVAMFTLLN AVFHFLVGYY FHLKKAPSQA LKYLVLVLAL SFATLVIPIQ FKGTWITIFW IAEAALLFGF GRTKKMPVYE RISYAVAILA TFSLLIDWGK GSYSIFDMED ARAYITPFAN LLFITGLLYS VAVGAMAYIN DKYKETGTLN KVLSFLFNIF SVLILYCTFY REISVFCDMR ALHQDPVIYS HYEAYQDLNT FKGVWHIIYS VLFISAYSFL NVKYLKKKLL AELQIGLNFL LLTIFMTLGL YYFSELRERY MEEVQEGGQL SLWFLNIRYV GLLSLVVLGN SIYALSKFLE FKTGARRVLE MLLHLVILWV ASSELLHWTD IYESVANYKL GLTILWGGYA ILLVVLGIFK RKKYQRISGI ILVGFTLLKL FFYDTTHLDT LHKTIVFVLL GVLLLVASFL YNKYTKEIEG EQK
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