Gene Coch_1502 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1502 
Symbol 
ID8367940 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp1785188 
End bp1785994 
Gene Length807 bp 
Protein Length268 aa 
Translation table11 
GC content36% 
IMG OID644983936 
Productouter membrane assembly lipoprotein YfiO 
Protein accessionYP_003141609 
Protein GI256820330 
COG category[R] General function prediction only 
COG ID[COG4105] DNA uptake lipoprotein 
TIGRFAM ID[TIGR03302] outer membrane assembly lipoprotein YfiO 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAATAA AAAAATATAT CATCATCGGT CTGCTGACTG TGCTCTTTAC TTCGTGTGGA 
GAGTATCAAA AAGCCTTGAA ATCAAAAGAA GGAAGCGTAA AATACACTGA GGCTGAAAAG
CTATATAAGG CTAAAAAATA TAAAAAAGCG ACACGCCTTT TTGAACAAAT AGCTTCAGAA
TATGCGGGTA AGCCACAAGG AGAACGTATT TATTATATGT TTGGAGATTC TTACTATCAG
CTAAAACAAT ACAGTTTGGC GTCTTATCAG TTTGAACGAC TTCAGAAATT ATATCCTCGT
AGCGAAAAAG CTACAGAGTC GGCTTTCTTA GAAGCGAAAT CGCTTTACTT GGAAACTCCT
AAATATAGTG TAGACCAAAC TTATACCTAT CAGGCTCTTG AGAAATTACA ATACTTTTTG
GATAGATATT CTGATAGTGA ATATGCTAAA GAAGCTAACG AGCTAGCCTT AGACTTGGTA
ACTCGCTTAG AGAAAAAAGA GTTTGAAATA GCTAAACAAT ACGACCAAAT ACGTGACTAT
CAAGCAGCGA TGAAATCGTT AGACAATTTT CTGACTAACA ACCCAGGTAG TGCTTTTAGA
GAAGATGCGT TATACACGCG CTTACATTCA GCTTACGAGT GGGCTATCAA TAGTATAGAG
ACTAAAAAAG AGGAACGCCT CAATACCGCT AAAGAAGCTT ACGACAACTT ATTGCGTGCC
TATCCTGAAA CTAAATACAA GAAAGAAGCA GAGAATATGC TTGCTAAAAT AAACACATCA
TTAAAAAGTT TTATATCACA AAAATAA
 
Protein sequence
MLIKKYIIIG LLTVLFTSCG EYQKALKSKE GSVKYTEAEK LYKAKKYKKA TRLFEQIASE 
YAGKPQGERI YYMFGDSYYQ LKQYSLASYQ FERLQKLYPR SEKATESAFL EAKSLYLETP
KYSVDQTYTY QALEKLQYFL DRYSDSEYAK EANELALDLV TRLEKKEFEI AKQYDQIRDY
QAAMKSLDNF LTNNPGSAFR EDALYTRLHS AYEWAINSIE TKKEERLNTA KEAYDNLLRA
YPETKYKKEA ENMLAKINTS LKSFISQK