| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1485 |
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| Symbol | lysS |
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| ID | 8367922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 1763032 |
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| End bp | 1764720 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644983918 |
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| Product | lysyl-tRNA synthetase |
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| Protein accession | YP_003141592 |
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| Protein GI | 256820313 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
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| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTATCAG AACAAGAAAT CATTCGCAGA GAAAAACTCT CTAAATTGAA AGAATTGGGG
ATAAACCCTT ATCCCGCTCC ATTATATCCG GTTGATACTA CCTCTAAGGA CGTAGCCAAC
CATTATGAAG AAGGTAAACA AGTGGTTGTA GCCGGTAGAT TAATGTCGTT GCGTGTACAA
GGAAAAGCCT CGTTTGCTAC TTTGCAAGAT AGTGAAGGCA CGATGCAATT GTACTTCAAC
CGCGATGAGA TGTGCCCTAC CGATGATAAA ACGCTTTACA ACGAGGTGTT TAAAAAATTA
TTGGATTTAG GTGACTTTAT AGGTGCTGAA GGAACACTCT TCATCACTAA AATGGGTGAG
AAAACTGTGT TGGTAAAGAA CTTTACGCTA CTTTCAAAAG TATTACGTCC GCTACCTATG
CCTAAGGTAG ATGCCGATGG TAAAGTACAC GATGCCTTCA CCGATCCTGA ACAACGCTAC
CGTATGCGCT ATGTAGATTT GGTAGTAAAT CCACAAGTGA AAGAAGTGTT TATCAAGCGC
ACTAAACTCT TCAATGCTAT GCGTCAGTTT TTTAACGATG CAGGTTATTT GGAAGTAGAG
ACACCTATAC TACAAGCTAT ACCAGGGGGA GCTAGTGCAC GTCCGTTTAT CACCCATCAC
AATGCGTTGG ACATTCCGCT GTATATGCGT ATTGCCAATG AACTTTACTT AAAACGTCTT
ATTGTAGGAG GTTTTGACGG AGTGTATGAA TTTTCTAAGA ACTTCCGCAA CGAGGGTATG
GATAGAACTC ACAACCCTGA GTTTACGGCT ATGGAAATTT ATGTGGCTTA CAAAGATTAT
CACTGGATGA TGGACTTCAC TGAACGCTTG ATTGAGCATT GCGCTATGGC GGTTAATGGT
ACTACTAAGG CGACCTTTGG TAAACATACA GTAGATTTCA AAGCTCCTTA TCCACGCCTT
ACGATGACTG ATGCTATTAA ACAGTTCACA GGCTTTGACA TTACTGCGAA GACAGAAGAC
GAATTGAGAG CCTTTGCACA GTCTATCGGT ATTGCAGTAG ACGAGGCGAT GGGCAAGGGC
AAATTGATAG ATGAAATATT TGGTGAGAAA TGCGAAGGCA ACTTCATTCA GCCTACTTTC
ATCACTGATT ACCCCAAAGA GATGTCGCCA CTGACCAAAG AACACCGCGA CAACCCCGAC
CTTACTGAAC GTTTTGAGTT AATGGTATGC GGTAAGGAGA TTGCCAATGC TTATTCAGAA
TTAAACGACC CTATTGACCA ACGTGAGCGC TTTGAAGAAC AATTGCGACT CTCAGAAAAA
GGCGACGACG AAGCGATGTT TATTGACCAA GATTTTTTGC GTGCTCTTGA ATACGGTATG
CCACCTACCT CAGGTTTGGG TATCGGTATG GACAGACTCG TAATGTTCCT TACCAACAAT
GAGAGTATAC AAGAAGTATT GTTCTTCCCA CAAATGCGCC CCGAGAAGAA AGAAGTAGAG
CTTTCGGAAG ACGAGAAAGT AGTGTTTGAG CTTTTAAAAA CCTCAGAGAG ACTGCTTTTA
GATGCTCTCA AAACACAAAC AGCATTTTCT AACAAGAAAT GGGATAAAGC CATTAAAGGT
CTTACTAGTA AGAAAGTAGC AAAGGTAGTA AAAGAAGGAG AAGAACTGTT TGTGGAATTA
GCAAATTAA
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| Protein sequence | MLSEQEIIRR EKLSKLKELG INPYPAPLYP VDTTSKDVAN HYEEGKQVVV AGRLMSLRVQ
GKASFATLQD SEGTMQLYFN RDEMCPTDDK TLYNEVFKKL LDLGDFIGAE GTLFITKMGE
KTVLVKNFTL LSKVLRPLPM PKVDADGKVH DAFTDPEQRY RMRYVDLVVN PQVKEVFIKR
TKLFNAMRQF FNDAGYLEVE TPILQAIPGG ASARPFITHH NALDIPLYMR IANELYLKRL
IVGGFDGVYE FSKNFRNEGM DRTHNPEFTA MEIYVAYKDY HWMMDFTERL IEHCAMAVNG
TTKATFGKHT VDFKAPYPRL TMTDAIKQFT GFDITAKTED ELRAFAQSIG IAVDEAMGKG
KLIDEIFGEK CEGNFIQPTF ITDYPKEMSP LTKEHRDNPD LTERFELMVC GKEIANAYSE
LNDPIDQRER FEEQLRLSEK GDDEAMFIDQ DFLRALEYGM PPTSGLGIGM DRLVMFLTNN
ESIQEVLFFP QMRPEKKEVE LSEDEKVVFE LLKTSERLLL DALKTQTAFS NKKWDKAIKG
LTSKKVAKVV KEGEELFVEL AN
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