Gene Coch_1465 details

Gene Information

• Locus tag: Coch_1465
• Symbol: rplU
• ID: 8367902
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Capnocytophaga ochracea DSM 7271
• Kingdom: Bacteria
• Replicon accession: NC_013162
• Strand: +
• Start bp: 1730040
• End bp: 1730666
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 644983898
• Product: 50S ribosomal protein L21
• Protein accession: YP_003141572
• Protein GI: 256820293
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0261] Ribosomal protein L21
• TIGRFAM ID: [TIGR00061] ribosomal protein L21

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTATGCAA TTGTAGAGAT AGCAGGGCAA CAATTTAAAG TTAGCAAAGA CCAAAAAGTG 
TTTGTTCACC GTTTGCCTAA TCAAGAGGGA GAGAAAGTAG CGTTTAATAA CGTACTCCTT 
TTAGATAACA ACGGAACCAT CACCGTAGGC GCCCCAGCTA TAAATGGAGC TTCCGTAGAA 
GCAAAGGTTT TGAAACATTT GAAAGGTGAC AAAGTGCTCG TGTTCAAAAA GAAAAGACGT 
AAAGGTTACA AAGTTAAGAA CGGACACCGT CAGTTCCTTA CGCAAATTGT AATTGAGAAC 
ATCGTTGCAA GTGGTGCTAA AACTACCCAA GCAAAACCTA AGACAGAAAA AGCTCCTGTT 
AAGTCAGCAA AAGCTGATGA TTTGAAAAAG ATAGAAGGTA TTGGGCCTAA AGCAGCAGAA 
GCCTTAGTAG CAGCAGGGGT AGACACCTTT GCTAAATTAG CTAAGAAATC AGTTGAAGAA 
ATCAAAACCA TTCTATCAGA AACAAGTTCA ACCTTGGCAC ACTTAGACCC TCAAACTTGG 
GCAGCTCAAG CTCAATTAGC CGCTGACGGC AAATGGGACG AACTTAAAAA ATGGCAAGAC 
GAGTTGAACG GTGGTATCGT AAAATAA 

 

Protein sequence

MYAIVEIAGQ QFKVSKDQKV FVHRLPNQEG EKVAFNNVLL LDNNGTITVG APAINGASVE 
AKVLKHLKGD KVLVFKKKRR KGYKVKNGHR QFLTQIVIEN IVASGAKTTQ AKPKTEKAPV 
KSAKADDLKK IEGIGPKAAE ALVAAGVDTF AKLAKKSVEE IKTILSETSS TLAHLDPQTW 
AAQAQLAADG KWDELKKWQD ELNGGIVK