| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1416 |
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| Symbol | dapD |
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| ID | 8367848 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | - |
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| Start bp | 1655857 |
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| End bp | 1656672 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644983844 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_003141523 |
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| Protein GI | 256820244 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000388926 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACACT TAAAACAAAT GATAGATGAG GCGTGGGAGA ATCGCTCTCT GCTTCGTGAG
GAAATTGTAC AGCAAACCAT TAGAGAGGTG ATTCACCTCT TGGATTTAGG TAAATTGCGA
GTGGCAGAGC CTACTGCCGA TGGCTGGAAA GTAAACGAAT GGGTGAAAAA AGCTGTTGTG
CTTTACTTCC CTATCCAAAA TATGAAACCC GTAGAGGTAG GTATCTTTGA GTTTCACGAT
AAGATTCCGC TCAAACACAA CTACGATGAG AAAGGGGTGC GCGTAGTACC TCCTGCTGTA
GCACGCCGTG GCGCTTTTAT TGCTAAAGGC GCTATACTGA TGCCCAGCTA TGTGAATATA
GGGGCGTATG TAGATGAAGG TACAATGGTA GATACGTGGG CTACTGTGGG TAGTTGCGCT
CAAATAGGCA AGCACGTGCA CCTGAGTGGT GGCGTAGGTG TAGGAGGTGT ATTAGAACCC
TTGCAAGCAG CTCCCGTGAT AGTAGAAGAC GGAGCTTTCA TCGGGTCGCG TTGTATCTTG
GTAGAAGGAG TACGCGTAGG CAAAGAAGCG GTACTTGGTG CTAATGTAGT GCTTACAGCC
TCTACTAAAA TCATTGATGT AACGGGCAAT GAACCTAAAG AACTGAAAGG CTATGTACCT
GAACGTTCGG TAGTGATTCC TGGTAGTTAC ACCAAGCACT TCCCAGCAGG TGATTACCAA
GTGCCTTGTG CCCTTATCAT CGGGCAGCGT AAAGCCTCAA CCGACAAGAA AACTTCACTA
AACGATGCCC TTAGAGAATA TGGAGTTTCT GTATAA
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| Protein sequence | MEHLKQMIDE AWENRSLLRE EIVQQTIREV IHLLDLGKLR VAEPTADGWK VNEWVKKAVV
LYFPIQNMKP VEVGIFEFHD KIPLKHNYDE KGVRVVPPAV ARRGAFIAKG AILMPSYVNI
GAYVDEGTMV DTWATVGSCA QIGKHVHLSG GVGVGGVLEP LQAAPVIVED GAFIGSRCIL
VEGVRVGKEA VLGANVVLTA STKIIDVTGN EPKELKGYVP ERSVVIPGSY TKHFPAGDYQ
VPCALIIGQR KASTDKKTSL NDALREYGVS V
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