Gene Coch_1402 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1402 
Symbol 
ID8367834 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand- 
Start bp1644712 
End bp1645158 
Gene Length447 bp 
Protein Length148 aa 
Translation table11 
GC content36% 
IMG OID644983830 
Productprotein of unknown function DUF583 
Protein accessionYP_003141509 
Protein GI256820230 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1664] Integral membrane protein CcmA involved in cell shape determination 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.937379 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTATAT TTAATAAAGA GAGAGATAAT AAAAAGATTA TTATGGCAGC AGAAAATCCC 
ACAGGAAGTA GCAACCGTAT TGTTACTGAA ACAAAATTCA AAGGAGAAAT CAATTCAAAA 
TCTGATTTTA GAATTGATGG TGAAGTGGAA GGAACTTTCC AAACTTCAGG TAAATTAGTA 
GTAGGCAGAA CCGGTGTGAT AAAAGGCACT GTGATTTGCG AAAACGCCGA TATTGAAGGT 
AAAATAACAG GTACCCTCAA AGTGAGTAGT ATTTTAAGTT TAAAATCTAC TGCAGTTGTA 
GAAGGCGAAG TGTACGTAGA TAAGCTTTCT ATAGAACCAG GAGCGGTATT TAACGTTTCT 
TGCTCGATGA AAGGAGGCAA AAACAGCTTT ACCATCAATG AAAAACCACA AGCACCAGTT 
ACAGCCGAAA AACAACCACC TAAATAA
 
Protein sequence
MAIFNKERDN KKIIMAAENP TGSSNRIVTE TKFKGEINSK SDFRIDGEVE GTFQTSGKLV 
VGRTGVIKGT VICENADIEG KITGTLKVSS ILSLKSTAVV EGEVYVDKLS IEPGAVFNVS 
CSMKGGKNSF TINEKPQAPV TAEKQPPK