Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_1387 |
Symbol | |
ID | 8367819 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | + |
Start bp | 1625804 |
End bp | 1628830 |
Gene Length | 3027 bp |
Protein Length | 1008 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 644983815 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003141494 |
Protein GI | 256820215 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.840954 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGTAA AAATATCAAT GCTAATGTTC GTTTTTGCAT TGTTTGGCGG TGCGCTAATG GCACAAACGA AAGTAACTGG TACAGTTACA GGCAGTGATG GTATGCCACT GCCAGGTGTA AGTGTTGTGA TTAAAGGTAC AACACGTGGT GTTTCAACTG ACTTTGACGG GAAGTATGAA CTACAAGCAG CTGCTAATGA AACTATTGAG TACAGCTTCT TGGGGTATAG TACTCTGCAA AGAAAAGTTA CGAAAGCGAG CGGTACTCTT ACTTTAGATG TGGTGTTACA AGAAGAAGCA CAACAACTTG GTGAAGTAGT GGTAACCGCT TTGGGTATTA AACGCCAAGA AAAAGCCTTG AGTTATAACG TACAACAAGT GAAGTCGGAA GAACTTACCA AAGTGAAAGA CGTGAACGTG GTAAATAGCC TCAACGGTAA AGTAGCGGGG GTGAATATCC AACGTAGTTC TTCTGGGGTA GGTGGTTCTA CCAAAGTGGT AATGCGTGGT CTCAAATCAT TGGACGGTAA TAACGGTGTA CTTTATGTAA TTGATGGGGT GCCACTCTTC AATAAACAAA GTGATGGTGG TGGTAATAAC TTCGGTCGTC CAGGTGGAGG AGAAGGTATT TCAGATATCA ACCCTGAGGA TATCGAAAGT ATCAACGTAC TTACAGGTCC TTCGGCAGCA GCTTTGTACG GTAGTGAAGC CGCTAACGGG GTAATCCTTA TCAACACTAA AAAAGGTAAA GAAGGTAAAA CTGAAGTAAA CCTATCCAGC AGTGTAGAGT TGATGACTCC TATATTATTA CCTGAATTCC AAAATACTTA TGGTAGTAAT GGTGATAAAA GCTGGGGAGC TAAATTAGCA ACACCTTCTA CTTTCGAACC TCGTAAATTC TTCAATACAG GTACAAACTT TATGAACTCT GTTACCTTCT CTACAGGGAA CGCTCAAAAC CAAACTTTTG TATCGGCTGC ACAAACCAAT GCCGAAGGTC TCATTCCTAA CAACGCTTAC TATCGTTACA ACGTAGGGGT GCGCAATACC GCTAATTTTG CTAAAGATAA ATTGCACTTA GATGTAAGTG GTAACTTTAT CCGCCAAGGT AGCCGTAATA TGATGGCGGG AGGTGGTTAT TTCAACCCCT TAGTAGGTTT ATATTTAATG CCACGCAGTA TGGATTATCG CGATGTACAA GCTTATGAAC GCTACAACCC TTCAAGAGGT ATTTATGAAA GATATCAACC TTATTCTGAT AGAGTTGACA GTTACTTCTC CGAAAACCCT TATTGGGTAG CGAATCGAGA ACTCTTCTTG AACAACAAGA AACGCTATAT GATGTCGGCT TCTTTGAAAT ACGATATCCT CGATTGGTTG AACGTTACAG GGCGTGTGCG TTTAGATAAC GACTACGGTA CTGCTGAAGA AAAACTATAT GCCAGCACTA CCAACTTCTT AATCGGTTGG AAAACTGAAT GGGGGCCTAA CAACAACGGT TCTTATGCTA ATACCCAAAC TAAAGATGAG CAAACTTATG CCGATATAAT GTTTAACGTC AATAAAAACT TTGGCGAAAA ATTCTCTTTA ACAGCTAACG TTGGTTCAAG TTATAACGAC CGTTATAGCA CTGGTCTTTC AGCAAGAGGC GTGTTGTTCC GTTTGCCTAA CCTCTTCTCA ACAACTAACT TCGACCCCCA ACGAGGAGGC TCAGGTCAGA GCTATTCTCG CGCTAAAAAC GTAGCGGTAT TCGCAAGTGC CGAACTCGGC TATAAAGGTA TGTTATACCT CTCTGCTACA GGTCGTAACG ACTGGTCTTC ACAACTGGTA AACTCTGCCG AACCTTCATT CTTCTATCCT TCAGTAGGGC TTTCAGCTGT GATTTCTCAA ATGGCAAAAT TGCCTGAGTT TATCAACTAT TTGAAAGTAC GCGGTTCATA TACTGAGGTA GGTTCTCCTA TCAGCAAAAC AGGTATTACT CCAGGTACTA TTACTCACGA ACTTACTGCC GACGGCTTGA AAACTAATAA GGTATATCCT TATCCAGAAT TTAAAGCTGA ACGCACTACT TCTTGGGAAG CTGGTTTAAA TACGAAATTG TTCGGTAATA GCTTGTCAGT AGATTTGACT TTATACAAAT CTAACACTTA TAACCAATTC TTTGAACAAC AATTGTCCGC TTCTTCTATC TACTCTTCTT TCTATTTGCA AGCAGGTAAC GTTGAAAACC GCGGTATTGA GTTGTCAGTA AATTACAATA AAGAATTCCT TAACAAAGAA CTCAACTGGA ATTCTACTCT TACCTATTCA CGCAATGTGA ACGAAATAAA AGAATTAGTT CGCGGTTACC GCAATCCTTT CACAGGTGAA TTATTCGATA TTACCGAAGT GCGCAAAGGT AGCACTGTAT TGCGCGAAGG CGGTAGTATG TCCGATGTTG TAGTAAGAGG TGTATTGCTC CGCGATGTGA ACGGTGATCT TATCGAAGAA GCTTCTCAAT ACAAATTTGA TAAAACTCAA GAAGTAAAAT TAGGACGTTC TACCCCCGAT TTCCAAATGG GGTGGCGCAA CACCCTTTCT TATAAAGGTA TCGATTTGAG CTTTTTGTTC AACGGTAGCT TTGGAGGTAT CGTTTTAGCA GGTACACAAC CTATGCTCGA TGCTTATGGA GTATCAAAAG CTTCTGCCGA TGCTCGTGAT AACGATGGAG TAGTAGTGAA TGGTAAAAAA TACGACGCTC AAAAATACTA CAATACCATT AAAGACCTTC CTGGTTATTA CTCTTACGAC GCTACTAACG TACGTCTCCA AGAAGTATCA CTCAACTATA CTATAGATGG TAAACACTTC TGGGATAAAG TGAAAAGCGT AACGATTGGT GCCATTGGTA CTAACCTTTG GATGATTTAC AACAAAGCTC CTTTCGACCC TCAACTTACT TATGGTGTAG GTACCTATGC TACTACTGAG TTCTTTATGA CTCCAAGTGC AGCTACTTAC GGTGCGAGCT TGAAAATTAA ATTCTAA
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Protein sequence | MKVKISMLMF VFALFGGALM AQTKVTGTVT GSDGMPLPGV SVVIKGTTRG VSTDFDGKYE LQAAANETIE YSFLGYSTLQ RKVTKASGTL TLDVVLQEEA QQLGEVVVTA LGIKRQEKAL SYNVQQVKSE ELTKVKDVNV VNSLNGKVAG VNIQRSSSGV GGSTKVVMRG LKSLDGNNGV LYVIDGVPLF NKQSDGGGNN FGRPGGGEGI SDINPEDIES INVLTGPSAA ALYGSEAANG VILINTKKGK EGKTEVNLSS SVELMTPILL PEFQNTYGSN GDKSWGAKLA TPSTFEPRKF FNTGTNFMNS VTFSTGNAQN QTFVSAAQTN AEGLIPNNAY YRYNVGVRNT ANFAKDKLHL DVSGNFIRQG SRNMMAGGGY FNPLVGLYLM PRSMDYRDVQ AYERYNPSRG IYERYQPYSD RVDSYFSENP YWVANRELFL NNKKRYMMSA SLKYDILDWL NVTGRVRLDN DYGTAEEKLY ASTTNFLIGW KTEWGPNNNG SYANTQTKDE QTYADIMFNV NKNFGEKFSL TANVGSSYND RYSTGLSARG VLFRLPNLFS TTNFDPQRGG SGQSYSRAKN VAVFASAELG YKGMLYLSAT GRNDWSSQLV NSAEPSFFYP SVGLSAVISQ MAKLPEFINY LKVRGSYTEV GSPISKTGIT PGTITHELTA DGLKTNKVYP YPEFKAERTT SWEAGLNTKL FGNSLSVDLT LYKSNTYNQF FEQQLSASSI YSSFYLQAGN VENRGIELSV NYNKEFLNKE LNWNSTLTYS RNVNEIKELV RGYRNPFTGE LFDITEVRKG STVLREGGSM SDVVVRGVLL RDVNGDLIEE ASQYKFDKTQ EVKLGRSTPD FQMGWRNTLS YKGIDLSFLF NGSFGGIVLA GTQPMLDAYG VSKASADARD NDGVVVNGKK YDAQKYYNTI KDLPGYYSYD ATNVRLQEVS LNYTIDGKHF WDKVKSVTIG AIGTNLWMIY NKAPFDPQLT YGVGTYATTE FFMTPSAATY GASLKIKF
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