| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1331 |
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| Symbol | |
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| ID | 8367762 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | - |
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| Start bp | 1546508 |
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| End bp | 1548217 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644983758 |
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| Product | deoxyxylulose-5-phosphate synthase |
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| Protein accession | YP_003141438 |
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| Protein GI | 256820159 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACAAC TAAAAAATAC TCTTATAACC TCTCTTCCTG CTCTGGCGCA ACAAATCCGC
AACCGCATTA TAGAGGTTAT TGCTACACGA GGTGGGCACT TAGGTGCAAG TCTCGGAGTG
GTAGAGCTTA CTATTGCGTT GCACTATGTG TTCGATACTC CTCAGGATAT ACTAGTATGG
GACGTAGGGC ACCAGAGTTA TGCTCATAAA ATCCTCACCG GTAGAAACGA GGATTTTACA
CATATACGCG AGCGAGGAGG TATCAGTGGT TTTCCTAAAC GTGCAGAAAG TCAGTACGAT
GCTTTTGGTA CGGGACACTC ATCTACCTCT CTTTCTGCTG TCTTGGGTAT GGCAATGGCA
TCAGCTTTGA CAGGCGATAA AAAGCGACAA CATATAGCCG TAATAGGCGA TGCTTCTATT
GTGAGTGGTA TGGCTTTCGA GGCTCTGAAC TATGCAGGCA CCACCGATGC CAATATGCTC
ATTATACTGA ACGACAATGC AATGGCTATC GACCCCACCG TAGGAGCGTT CTCTCATTAC
CTTGCCCAAC TGAAAACCGA ACACGCTACC CACAGTGCTT TTTTTAGTGC TTTGGGGATT
ACCTACAAAG GCGTAGTAGA CGGGCACAAC CTCCCCGCGC TTATCACGGC ACTCAAAGCC
GAAAAGCAAG CCCGTGGAGT GCGCCTCTTA CACGTTGTCA CCACCAAAGG TAAAGGATAC
CCCAAAGCCG AAGCCTCACA AGTATTCTTC CATTCCCCCT CACAATTCGA TAAAATCACA
GGCAACCCTC TGCCTGAAAA CTCTGCTCTC CCTGCTAAAT ATCAAGACGT AGTAGGGCAA
ACCCTCACCG AACTCGCCCA GCAGAACCCC AAGATAGTTG TCATCACCCC TGCGATGAGT
AGTGGTAGCG GACTCACAAC TATGCAAAAG GCATTCCCCG ATAGGGTAAT GGACGTCGGT
ATTGCCGAAC AACACGCGGT TACCTTTGCT GCCGGTTGGG CTACACAAGG TTTTATACCG
TACTGTGTCG TATATTCCAC ATTTTTACAG CGCGCTTACG ACCAGCTTAT TCACGATGTA
GCCCTCCAAA ACCTGCCCGT AGTATTCTGT ATAGACCGTG CAGGACTCGT AGGCGAAGAC
GGTGCCACTC ATCACGGAGT GTTTGATATG GCTTTCTTGC GCCCTATTCC TAACCTCATT
ATCGCTTCAC CCCGTAATGC TACCGAGTTG CGCAATTTGC TCTATACCGC TCAGCAATCG
CTCGAGCACC CCATTGTCAT TCGTTATCCT CGTGGTCGTT GTACACAAAC CGATTGGCAA
CAACCTTTTC AACAGCTAAT TATAGGCAAA GGCGAACAGC TAAAAGAAGG TAGCGAGATA
GCCGTACTCA CCATTGGCGC CATTGCCGAA AATGTACAAC AACAGCTCAC TCAAACTGCT
GAACCCGAAA AATATGCCCA TTACGATGCC CGTTTTCTCA AACCTTTGGA CGAGGCGACG
CTACATCATA TCTTCCGTTC TTATAAAAAA GTAATCACAG TAGAAGAAGG AAGCACAGGC
GGTTTAGGCA GCGCCGTAGC CGAATTTGCT ACCCAACACG GTTATACTAT ACCTTTGAAA
ATCATCACCC TTCCTGATAG TTTTATTCCT CACGGCAAAG TAGAGACGCT CAAAGAAGAG
TTTTTAAAAA TTAGAGATTT AGCAGATTGA
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| Protein sequence | MQQLKNTLIT SLPALAQQIR NRIIEVIATR GGHLGASLGV VELTIALHYV FDTPQDILVW
DVGHQSYAHK ILTGRNEDFT HIRERGGISG FPKRAESQYD AFGTGHSSTS LSAVLGMAMA
SALTGDKKRQ HIAVIGDASI VSGMAFEALN YAGTTDANML IILNDNAMAI DPTVGAFSHY
LAQLKTEHAT HSAFFSALGI TYKGVVDGHN LPALITALKA EKQARGVRLL HVVTTKGKGY
PKAEASQVFF HSPSQFDKIT GNPLPENSAL PAKYQDVVGQ TLTELAQQNP KIVVITPAMS
SGSGLTTMQK AFPDRVMDVG IAEQHAVTFA AGWATQGFIP YCVVYSTFLQ RAYDQLIHDV
ALQNLPVVFC IDRAGLVGED GATHHGVFDM AFLRPIPNLI IASPRNATEL RNLLYTAQQS
LEHPIVIRYP RGRCTQTDWQ QPFQQLIIGK GEQLKEGSEI AVLTIGAIAE NVQQQLTQTA
EPEKYAHYDA RFLKPLDEAT LHHIFRSYKK VITVEEGSTG GLGSAVAEFA TQHGYTIPLK
IITLPDSFIP HGKVETLKEE FLKIRDLAD
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