Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_1311 |
Symbol | |
ID | 8367742 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | + |
Start bp | 1525041 |
End bp | 1527203 |
Gene Length | 2163 bp |
Protein Length | 720 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644983738 |
Product | TonB-dependent receptor |
Protein accession | YP_003141418 |
Protein GI | 256820139 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAAATG TACTTTTGTA CACTGCTATT TGCCTTACTA CATCGGCAAT GGCACAACAG GCAATAGAGC CTGACTCTAT CGTCCCTTCA CCTAAGCCCA TTCAGTTAGA CGAAGTATTA GTATCGTCCG TGAGGGCTAC CAAAAAACTT CCCGTAACGT TCTCCAATCT TTCTAAGGAG GAAATCAAGA CCAAAAATTT CGGTCAACAA TTGCCTTTGT TGTTAGGTCA GTTGCCTAAC GTAGTGAGCT ATTCCGAAGA TGGTTCGGGC TTCGGTAGTA GCAATATGTT TGTACGTGGG AGCGATTTGT ACCGTACTAA TGTTACTATC AACGGCATAC CGCTCAACGA CTCCGAATCA CAAGGGGTTT TCTGGTATAA TCTCTCCGAC TTTGCTTCTT CTGCCGAAAA TATACAGTTG CAACGCGGGG TAGGTACTTC TTCCAATGGA GCAGGAGCTT TTGGTGCAAG CCTCAACGTC CTCACCGATG CTGTACAAGA GCAGGCATCA GGAGAACTCG CTAACTTCTA CGGCAGTTAT AATACTCACA AACACAGTCT TAAACTTTCC ACCGGGAAAC TCAACGACCG TTTTGAACTC AACGGACGCT TTTCTGTTAT CAAGAGTGAT GGATATCGCG ACCGCGCTTC CTCCGACCTA AAATCGTACT TCTTACAAGG CGCTTATAGC CACGGGGGGA CGCTCATCAA AGGATTGGTG TTTGGTGGCA AACAAAGTGT CTATCTCACT TATCTGGGAG TAGATAAAGA GACTTTACAC AGTAATCGCC GTTATAATCC TGCGGGTGAG TACAAAGATA CCGCTGGTAA CAAACGTTTC TATGAAAACG AAACCGATAA CTATCAGCAA GATCACGCGC AATTACACTG GACGCAACAG TGGAATACGG CGTGGCATAC GCAACTTTCC TTCCACTACA CCAAAGGTAA AGGCTATTGG GAGAACTATG AGAAGAAAAA ATATTCTAAG GTAGGATTGC CCAAAGTGCT CGACGGAGCA GGCAAGGAGC AAAAAGCATA CATCATTCAC CAACAAGGAT TAGACAACGA TTTCTGGGGT ACTACTTTTT CGGCAAACTA TCAGAAAGAT GGTGTGCAAT TGCTCTTTGG AGGATTGCTC AATCGCTATG AAGGCTCGCA TTACAAGGAT TTGTTATGGG CAGAAAAAGC GCCTTTTGTG TATGGCAATC GTTATAGCTA CGAAGGACTC AACACCAAAG AAGAAGTAGC GGGCTACGGC AAACTCACTT GGCAATTTGC CCCTAAATGG AGCCTGTTTG CCGATGTACA ATGCCGTCAC GTAGGGTATA AGGCAAATAA ATACAAAGTA GACGAAAGCC TTAACAGTTT CAACCCTAAG ACGGGTATTA CTTTCTTCTT GAATGCACAT AACGACCTTT ACCTCTCTTA TGCTCGTGCT ACCAAAGAGC CTAACCGCTC CGATTACAAG AGTTATTACG AAGCACTACA AGACGACCCT AATGCTAAAA AACCGATAGC CGAGAAGCTC AACGATATAG AACTCGGTTG GCGACTCACC ACCCCCAAAG TGCGTTTGAA TCTCAATGGT TATTATATGG GCTATGAAGA CCAATTAGTG CTTTCAGGTA AGCTCAATAG CACCGGTTAT CCTATCCGTG AGAATGTAGG CAAGAGCTAT CGTGCAGGAA TTGAAGCCGA TGCGATGGTG CAACTCTCAG AACGTTGGTT GTGGTCGCCT AATATAGCTT TTAGCAAAAA TATAAACAGA GATTATAAGA GTCAAGATGC TGAGGTAGCC ACTCGCACCA TTAGCTGGGG CAATACCCGC ATTTCGTATT CTCCTGATGT AGTGCTCAGT AATACGATTA CTTTTATGCC TATTGATGGT TTTCAAATAG GTTTGATTTC TAAATATGTA GGTGCACAAT ATGTAGATAA CACCGAGCGT GAGGAAGCAA AACTCGATGC TTATTTCGTG AATAACCTCA GTTTGCAATA CGAGTGGAAA CCTAAAAGCA CTTTCAAATC GGTGTTGTTT TCGGTAATGG GTAATAATAT TTTCAATACC AAATACACTC CTTACGGCGA TAACGGCTAC GGAATGTTGT ATATTCCCGC TGCCGAAGCC AATTACTTAG CAGGCGTAAC GCTCAGTTTT TAG
|
Protein sequence | MKNVLLYTAI CLTTSAMAQQ AIEPDSIVPS PKPIQLDEVL VSSVRATKKL PVTFSNLSKE EIKTKNFGQQ LPLLLGQLPN VVSYSEDGSG FGSSNMFVRG SDLYRTNVTI NGIPLNDSES QGVFWYNLSD FASSAENIQL QRGVGTSSNG AGAFGASLNV LTDAVQEQAS GELANFYGSY NTHKHSLKLS TGKLNDRFEL NGRFSVIKSD GYRDRASSDL KSYFLQGAYS HGGTLIKGLV FGGKQSVYLT YLGVDKETLH SNRRYNPAGE YKDTAGNKRF YENETDNYQQ DHAQLHWTQQ WNTAWHTQLS FHYTKGKGYW ENYEKKKYSK VGLPKVLDGA GKEQKAYIIH QQGLDNDFWG TTFSANYQKD GVQLLFGGLL NRYEGSHYKD LLWAEKAPFV YGNRYSYEGL NTKEEVAGYG KLTWQFAPKW SLFADVQCRH VGYKANKYKV DESLNSFNPK TGITFFLNAH NDLYLSYARA TKEPNRSDYK SYYEALQDDP NAKKPIAEKL NDIELGWRLT TPKVRLNLNG YYMGYEDQLV LSGKLNSTGY PIRENVGKSY RAGIEADAMV QLSERWLWSP NIAFSKNINR DYKSQDAEVA TRTISWGNTR ISYSPDVVLS NTITFMPIDG FQIGLISKYV GAQYVDNTER EEAKLDAYFV NNLSLQYEWK PKSTFKSVLF SVMGNNIFNT KYTPYGDNGY GMLYIPAAEA NYLAGVTLSF
|
| |