Gene Coch_1311 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1311 
Symbol 
ID8367742 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp1525041 
End bp1527203 
Gene Length2163 bp 
Protein Length720 aa 
Translation table11 
GC content44% 
IMG OID644983738 
ProductTonB-dependent receptor 
Protein accessionYP_003141418 
Protein GI256820139 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAATG TACTTTTGTA CACTGCTATT TGCCTTACTA CATCGGCAAT GGCACAACAG 
GCAATAGAGC CTGACTCTAT CGTCCCTTCA CCTAAGCCCA TTCAGTTAGA CGAAGTATTA
GTATCGTCCG TGAGGGCTAC CAAAAAACTT CCCGTAACGT TCTCCAATCT TTCTAAGGAG
GAAATCAAGA CCAAAAATTT CGGTCAACAA TTGCCTTTGT TGTTAGGTCA GTTGCCTAAC
GTAGTGAGCT ATTCCGAAGA TGGTTCGGGC TTCGGTAGTA GCAATATGTT TGTACGTGGG
AGCGATTTGT ACCGTACTAA TGTTACTATC AACGGCATAC CGCTCAACGA CTCCGAATCA
CAAGGGGTTT TCTGGTATAA TCTCTCCGAC TTTGCTTCTT CTGCCGAAAA TATACAGTTG
CAACGCGGGG TAGGTACTTC TTCCAATGGA GCAGGAGCTT TTGGTGCAAG CCTCAACGTC
CTCACCGATG CTGTACAAGA GCAGGCATCA GGAGAACTCG CTAACTTCTA CGGCAGTTAT
AATACTCACA AACACAGTCT TAAACTTTCC ACCGGGAAAC TCAACGACCG TTTTGAACTC
AACGGACGCT TTTCTGTTAT CAAGAGTGAT GGATATCGCG ACCGCGCTTC CTCCGACCTA
AAATCGTACT TCTTACAAGG CGCTTATAGC CACGGGGGGA CGCTCATCAA AGGATTGGTG
TTTGGTGGCA AACAAAGTGT CTATCTCACT TATCTGGGAG TAGATAAAGA GACTTTACAC
AGTAATCGCC GTTATAATCC TGCGGGTGAG TACAAAGATA CCGCTGGTAA CAAACGTTTC
TATGAAAACG AAACCGATAA CTATCAGCAA GATCACGCGC AATTACACTG GACGCAACAG
TGGAATACGG CGTGGCATAC GCAACTTTCC TTCCACTACA CCAAAGGTAA AGGCTATTGG
GAGAACTATG AGAAGAAAAA ATATTCTAAG GTAGGATTGC CCAAAGTGCT CGACGGAGCA
GGCAAGGAGC AAAAAGCATA CATCATTCAC CAACAAGGAT TAGACAACGA TTTCTGGGGT
ACTACTTTTT CGGCAAACTA TCAGAAAGAT GGTGTGCAAT TGCTCTTTGG AGGATTGCTC
AATCGCTATG AAGGCTCGCA TTACAAGGAT TTGTTATGGG CAGAAAAAGC GCCTTTTGTG
TATGGCAATC GTTATAGCTA CGAAGGACTC AACACCAAAG AAGAAGTAGC GGGCTACGGC
AAACTCACTT GGCAATTTGC CCCTAAATGG AGCCTGTTTG CCGATGTACA ATGCCGTCAC
GTAGGGTATA AGGCAAATAA ATACAAAGTA GACGAAAGCC TTAACAGTTT CAACCCTAAG
ACGGGTATTA CTTTCTTCTT GAATGCACAT AACGACCTTT ACCTCTCTTA TGCTCGTGCT
ACCAAAGAGC CTAACCGCTC CGATTACAAG AGTTATTACG AAGCACTACA AGACGACCCT
AATGCTAAAA AACCGATAGC CGAGAAGCTC AACGATATAG AACTCGGTTG GCGACTCACC
ACCCCCAAAG TGCGTTTGAA TCTCAATGGT TATTATATGG GCTATGAAGA CCAATTAGTG
CTTTCAGGTA AGCTCAATAG CACCGGTTAT CCTATCCGTG AGAATGTAGG CAAGAGCTAT
CGTGCAGGAA TTGAAGCCGA TGCGATGGTG CAACTCTCAG AACGTTGGTT GTGGTCGCCT
AATATAGCTT TTAGCAAAAA TATAAACAGA GATTATAAGA GTCAAGATGC TGAGGTAGCC
ACTCGCACCA TTAGCTGGGG CAATACCCGC ATTTCGTATT CTCCTGATGT AGTGCTCAGT
AATACGATTA CTTTTATGCC TATTGATGGT TTTCAAATAG GTTTGATTTC TAAATATGTA
GGTGCACAAT ATGTAGATAA CACCGAGCGT GAGGAAGCAA AACTCGATGC TTATTTCGTG
AATAACCTCA GTTTGCAATA CGAGTGGAAA CCTAAAAGCA CTTTCAAATC GGTGTTGTTT
TCGGTAATGG GTAATAATAT TTTCAATACC AAATACACTC CTTACGGCGA TAACGGCTAC
GGAATGTTGT ATATTCCCGC TGCCGAAGCC AATTACTTAG CAGGCGTAAC GCTCAGTTTT
TAG
 
Protein sequence
MKNVLLYTAI CLTTSAMAQQ AIEPDSIVPS PKPIQLDEVL VSSVRATKKL PVTFSNLSKE 
EIKTKNFGQQ LPLLLGQLPN VVSYSEDGSG FGSSNMFVRG SDLYRTNVTI NGIPLNDSES
QGVFWYNLSD FASSAENIQL QRGVGTSSNG AGAFGASLNV LTDAVQEQAS GELANFYGSY
NTHKHSLKLS TGKLNDRFEL NGRFSVIKSD GYRDRASSDL KSYFLQGAYS HGGTLIKGLV
FGGKQSVYLT YLGVDKETLH SNRRYNPAGE YKDTAGNKRF YENETDNYQQ DHAQLHWTQQ
WNTAWHTQLS FHYTKGKGYW ENYEKKKYSK VGLPKVLDGA GKEQKAYIIH QQGLDNDFWG
TTFSANYQKD GVQLLFGGLL NRYEGSHYKD LLWAEKAPFV YGNRYSYEGL NTKEEVAGYG
KLTWQFAPKW SLFADVQCRH VGYKANKYKV DESLNSFNPK TGITFFLNAH NDLYLSYARA
TKEPNRSDYK SYYEALQDDP NAKKPIAEKL NDIELGWRLT TPKVRLNLNG YYMGYEDQLV
LSGKLNSTGY PIRENVGKSY RAGIEADAMV QLSERWLWSP NIAFSKNINR DYKSQDAEVA
TRTISWGNTR ISYSPDVVLS NTITFMPIDG FQIGLISKYV GAQYVDNTER EEAKLDAYFV
NNLSLQYEWK PKSTFKSVLF SVMGNNIFNT KYTPYGDNGY GMLYIPAAEA NYLAGVTLSF