Gene Coch_1309 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1309 
Symbol 
ID8367740 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp1522585 
End bp1523466 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content43% 
IMG OID644983736 
ProductNAD-dependent epimerase/dehydratase 
Protein accessionYP_003141416 
Protein GI256820137 
COG category[G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0702] Predicted nucleoside-diphosphate-sugar epimerases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATCAT CAGAAAAAAT ATTATTAGCC GGAGCGACCG GTTATTTAGG TCAGTTTATA 
TTAGCTGAAC TCTTGAAAAA AGAATACTCT ACCCGCATTG TGGTGCGTAA TAAGTCGAAA
ATAGCACCCG CCTTACTTAC CCACCCGCTA TTAGAAGTAG TCGAGGCTGA GGTAACAAAA
CCCAATACTT TACTCGGTGT GTGCGAGGGG GTTACCCAAG TGATTTCCAC TGTCGGAATT
ACTCGGCAGA AAGACAAACT CACCTACGAG CAAGTAGATT ATGCGGCTAA CAAGAACTTG
CTTGATGAAG CACTGCGCTC AGGGGTACGT AAGTTTGTAT ATATTTCCGT ATTAAACGGC
GAAGCATTAC GTTCTATTGC CATTGGGGCT GCCAAAGAGC ATTTTGTAGA TACCCTTAAA
ACCAGTGGAA TGGACTACTG TATCGTGCGT CCATCGGCTT TTTACAGCGA TATAGCTACC
TTCTTTTCAA TGGCAAAAGA AGGTAAAGTG CGTCTGTTTG GCAAAGGGCA ATACGCTATG
AATCCTATTC ACGGCGAGGA TTTAGCCGAG GTGTGTGTAG CGCAATTAGA GAGCTCCGAA
AAGGAAGTGA ATGTAGGAGG GGCTGAGGTG TTCACCCAGT ATGAAATCGC TGCTTTGGCT
TTCGAGGTGT TACATAAGCC TGTGAAGGTT GGTTTTTTGC CTGATTGGGT ACGGAAGTCC
GTTTTGAAAA TAGGCAAATA TCTCTTGCCT AAAAGTGCTT ACGGCACTAT AGAATTCGTT
TTCACCGTAA TGGCAATGGA TTCGGTAGCG CCAATGAAGG TAGGAAAACA TAGGTTGAAG
GTATTTTTTG AGGAACTTCG AAATAAATAT TTGCATTTGT AG
 
Protein sequence
MKSSEKILLA GATGYLGQFI LAELLKKEYS TRIVVRNKSK IAPALLTHPL LEVVEAEVTK 
PNTLLGVCEG VTQVISTVGI TRQKDKLTYE QVDYAANKNL LDEALRSGVR KFVYISVLNG
EALRSIAIGA AKEHFVDTLK TSGMDYCIVR PSAFYSDIAT FFSMAKEGKV RLFGKGQYAM
NPIHGEDLAE VCVAQLESSE KEVNVGGAEV FTQYEIAALA FEVLHKPVKV GFLPDWVRKS
VLKIGKYLLP KSAYGTIEFV FTVMAMDSVA PMKVGKHRLK VFFEELRNKY LHL