| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1261 |
|---|
| Symbol | infB |
|---|
| ID | 8367691 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 1469272 |
|---|
| End bp | 1472109 |
|---|
| Gene Length | 2838 bp |
|---|
| Protein Length | 945 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644983690 |
|---|
| Product | translation initiation factor IF-2 |
|---|
| Protein accession | YP_003141370 |
|---|
| Protein GI | 256820091 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0532] Translation initiation factor 2 (IF-2; GTPase) |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00487] translation initiation factor IF-2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.817984 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGG GAAAAAAAAT AAGATTAAGC AAAGTTTTAA AGGAGTTCAA TATCTCTATG
GTAACAGCCG TAGAATATCT GAAGAAGGAG AAAGGGATAG AAATAGAATC TAACCCTAAT
ACTTCTATTA CAGAAGATAT TGTAAAGTTC CTTTCGAACA AATTTAACGC CGACAAGAGT
AAGCGTGAGG TTTCAAAAGA GATAGTGGAA GACAAACGCA AAGAGCGCGA GGCTATCCGC
ATAGAGCAAG AGAAAGAAAA CCAAGAGAAG CGCAAACAGC AGGAGCAAGA AGTAATAAAA
GCTAAAGCTC AACTGGCTGG ACTCAAACCT ATGGGTAAAA TAGACCTCGA AGGAAGTAAT
AGAAAAGATG GGATAGCTCC TGTTCAAGAA ACGCCTAAAA CAGAAGTTAC TGCTCCAAAA
CAGGAAGTAA CTACTTCTAA AACAGAGACA ACAACCCCGA AGCAAGAAGC AACTCCTGGA
ACAGTGCAAT CTCAGTCGCC TGCCAAGGAC AAGAAAAAAG ACAACAACAA ACCCGACGCT
CAAAAGAATA AATCTGCTTA TCAAAATCCA TTGGCACAAA CCGTTGCTAC GCAAAAGAAG
AAGGAACAAC AGAACCATAA CCCTAAGGAA GAACTCACCA CTGAAATCCC TGCAGGTGTG
ATTGAAACTC AATACCAAAA GCTCACAGGT CCTAAAGTAG TGGGTGAGAA AATAGACCTT
AGTCAGTTTG AGAAAAAGAA GAAAAAACGC AAACGCACTC GTCACAAAGA CAAGGATAAA
GAGACTCAAA CTACTGTTAA TAGCACTACT GATGCTACCG GCGACAGCGA AAAACGCAAA
CGCAAACGCA TTCGCAAAGA TGAAGTGAAT GTAGCTAAAG GTGGTGACAA CGCAAAGAAA
GAGAAGAAAA ACAAGATTAT TGCCAAAATA GAACCTTCCG AAGAAGAAGT ACAAAAACAA
GTGCGCGAGA CCCTTGAGCG CTTGCAAGGT AAAGGTACAA AATCTAAGGG GGCTAAATAC
CGCAAAGAAA AACGAGAAAC ACACCGACAA AAGGTAGAAC AAGAGCTTGC TGAACAAGAA
CAACAAGAGA AAATACTAAA AGTAACCGAG TTTGTAACAG TAAACGAACT GGCTACAATG
ATGGACGTGC CTATCAATAA GGTGATTGGT GCGTGTATGT CTCTCGGTAT TATGGTAACA
ATGAACCAGC GTCTTGATGC CGAAACTCTC TCGATAGTAG CTGATGAGTT TGGCTATGAG
GTGGAATTTG CAACAGCTAA CATCGAAGAA GCTATCCATA CCGAAGAAGA TCAACCTGAA
GATTTAGTAC CTCGTGCACC TATTGTTACT GTAATGGGGC ACGTAGACCA CGGTAAAACA
TCGCTCTTAG ACTACATTCG TAAAGAAAAT GTAATCGCAG GAGAAAGTGG CGGTATTACT
CAGCACATTG GGGCTTACAG CGTGAAATTA GAAAGTGGTG AACGTATCAC TTTCCTTGAT
ACTCCTGGTC ACGAAGCCTT TACCGCTATG CGTGCCCGTG GTACCAAAGT AACCGATATT
GCTATTATTG TGGTAGCTGC CGATGACGAT GTGATGCCTC AAACCAAAGA GGCTATTAGT
CACGCACAAG CCGCAGGAGT ACCTATTATC TTTGCCATTA ACAAGATTGA TAAACCGAAT
GCGAACCCCG ATAAAATTAA AGAACACTTG GCGACTATGA ACCTTCTCGT AGAAGAATGG
GGCGGTAAAA TACAGTCGCA GGATATTTCG GCAAAGCAAG GTATCGGTGT ATCTGAACTA
TTGGAAAAAG TACTCTTAGA AGCTGAAATT CTTGAACTGA AAGCAAATCC CAACAAACCG
GCGGTAGGTA CTGTAGTGGA AGCAGCTCTT GACAAAGGTC GTGGTTATGT ATCTACTATA
TTGGTAGAAT CGGGTACGTT GCACGTAGGC GACTATGTAC TGGCAGGTAC CAACTCTGGT
AAAATACGTG CTATGCACGA CGAACGAGGT AAGAAGGTAA AAGAAGCAGG CCCCTCTACT
CCTATTTCTA TCTTAGGATT GGACGGTGCT CCACAAGCAG GTGATAAATT CTACGTATTC
GAAGACGAAA AAGAAGCCAA ACAGATTGTA GCTAAACGCG CTCAATTACA ACGCGAACAA
TCAGTACGTA CGCAACGCCA CATCACCCTC GACGAGATAG GGCGACGCAT TGCTCTCGGT
GACTTCAAAC AGTTGAATAT TATTCTTAAA GGTGACGTAG ACGGCTCAGT AGAAGCTCTT
ACCGACTCTT TCCAAAAGCT CTCTACTGAA GAGATACAAG TGTCTATCAT TCATAAAGGC
GTGGGAGCGA TTACCGAGTC TGATGTATTA TTGGCTTCTG CCTCCGATGC TATTATCATT
GGTTTCAACG TTCGTCCGAT GACTAACGCA CGCGCCTTGG CAGAAAAAGA ATCTATCGAT
ATCCGTACCT ACTCTATCAT CTACGACGCT ATCAACGACC TCAAAGACGC AATGGAAGGA
ATGCTTTCTC CTGTCTTCAA AGAAGAGGTT ACCGGTACTG TAGAAATACG CGAACTCTTC
AAGATTTCTA AAGTAGGAAC CATTGCGGGC TGTATGGTAA CCGATGGTAA AATCTACCGC
AACTCTAAGA TACGTCTATT GCGTGACAAT GTGGTGATTT ATACGGGTGA ACTTTCTTCA
CTCAAACGTT TCAAAGACGA TGTAAAAGAG GTGAGCAAAG GTTATGATTG CGGTTTGCAG
ATCAAGAACT ATAACGACAT TCACGAAGGT GACGTGATAG AAGCCTTCCA AGAAGTAGCT
GTAAAGAAGA AACTGTAA
|
|---|
| Protein sequence | MSEGKKIRLS KVLKEFNISM VTAVEYLKKE KGIEIESNPN TSITEDIVKF LSNKFNADKS
KREVSKEIVE DKRKEREAIR IEQEKENQEK RKQQEQEVIK AKAQLAGLKP MGKIDLEGSN
RKDGIAPVQE TPKTEVTAPK QEVTTSKTET TTPKQEATPG TVQSQSPAKD KKKDNNKPDA
QKNKSAYQNP LAQTVATQKK KEQQNHNPKE ELTTEIPAGV IETQYQKLTG PKVVGEKIDL
SQFEKKKKKR KRTRHKDKDK ETQTTVNSTT DATGDSEKRK RKRIRKDEVN VAKGGDNAKK
EKKNKIIAKI EPSEEEVQKQ VRETLERLQG KGTKSKGAKY RKEKRETHRQ KVEQELAEQE
QQEKILKVTE FVTVNELATM MDVPINKVIG ACMSLGIMVT MNQRLDAETL SIVADEFGYE
VEFATANIEE AIHTEEDQPE DLVPRAPIVT VMGHVDHGKT SLLDYIRKEN VIAGESGGIT
QHIGAYSVKL ESGERITFLD TPGHEAFTAM RARGTKVTDI AIIVVAADDD VMPQTKEAIS
HAQAAGVPII FAINKIDKPN ANPDKIKEHL ATMNLLVEEW GGKIQSQDIS AKQGIGVSEL
LEKVLLEAEI LELKANPNKP AVGTVVEAAL DKGRGYVSTI LVESGTLHVG DYVLAGTNSG
KIRAMHDERG KKVKEAGPST PISILGLDGA PQAGDKFYVF EDEKEAKQIV AKRAQLQREQ
SVRTQRHITL DEIGRRIALG DFKQLNIILK GDVDGSVEAL TDSFQKLSTE EIQVSIIHKG
VGAITESDVL LASASDAIII GFNVRPMTNA RALAEKESID IRTYSIIYDA INDLKDAMEG
MLSPVFKEEV TGTVEIRELF KISKVGTIAG CMVTDGKIYR NSKIRLLRDN VVIYTGELSS
LKRFKDDVKE VSKGYDCGLQ IKNYNDIHEG DVIEAFQEVA VKKKL
|
|---|
| |