Gene Coch_1238 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1238 
Symbol 
ID8367667 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp1445453 
End bp1446784 
Gene Length1332 bp 
Protein Length443 aa 
Translation table11 
GC content43% 
IMG OID644983668 
Productadenylosuccinate lyase 
Protein accessionYP_003141349 
Protein GI256820070 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0015] Adenylosuccinate lyase 
TIGRFAM ID[TIGR00928] adenylosuccinate lyase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAACCG CAATTTCCCC CATCGATGGT CGTTATGCCG ATAAAACGAC CTCCCTTGTG 
CCTTTCTTCT CCGAAATGGC ACTCATTCGT TATCGCGTAC AAGTGGAAGT AGAGTACTTT
ATCGCTCTAT GTGAACTCCC CTTGCCTCAA CTCGCCGATT TCCCTAAGGA AAGATACACC
AACCTTAGAA GACTCTACCA AAATTTCACC GAAGAGGAAG CTCTAAAAGT AAAAGAAATA
GAGCAAACTA CCAATCACGA TGTAAAAGCG GTTGAATATT TCATTAAAGA GGCTTTTGAT
AAACTGCAAT TAGAAAAATA CAAGGAGTTT ATCCACTTTG GTCTCACCTC TCAGGATATC
AACAATACCG CTATTCCACT TAGCATCAAG GAAGCTGTAC AACAAGTGTA TTTGCCTGCC
TTGGAGCAAT TGCTCAGCAA ACTGAGAAGT TTAGTAACCC AATGGAGAGA TGTCCCTCTA
CTAGCGCGCA CTCACGGTCA GCCGGCATCT CCTACGCGTT TAGGCAAGGA GTTCGAGGTG
TTTGTCGTTC GTATAGAACA GCAGTTACAA ACCCTTATAT CAGTGCCTTA TGCTGCCAAA
TTTGGGGGAG CTACCGGTAA CTACAACGCT CATAAGGTAG CCTATCCTAA TATCGATTGG
AAGGCTTTCG GCACCCGCTT TGTAGAGGAA ATATTAGGCT TGCACCACTC TTTCCCTACT
ACCCAAATTG AGCATTACGA CCATTTAGCC GCTCTTTTCG ATGCTCTCAA ACGCATCAAT
ACGATTCTCA TCGATTTAAA CCGCGATGTT TGGACATATA TCTCTATGGA TTACTTCAAA
CAACAGATAA AAGCAGGCGA GGTAGGCTCT TCGGCTATGC CTCATAAGGT AAACCCTATT
GATTTTGAAA ACTCCGAAGG TAATTTAGGT ATAGCCAACG CTCTTTTAGA GCATCTATCG
GCAAAATTGC CTATTTCCCG CTTACAGCGC GACCTCACCG ATAGTACTGT ATTGCGCAAT
GTAGGAGTAC CTTTTGGTCA TACACTCATA GCCCTACAAT CTACCCTCAA AGGACTTAAT
AAACTCCTTT TAAATGAGGA TAAAATCCGC GAAGATTTAC AAGACCATTG GGCAGTAGTA
GCTGAGGCTA TCCAAACGAT TTTGCGTCGT GAAGGTTATC CTAATCCGTA TGAAGCCCTC
AAAGCCCTCA CGCGCACTAA TACCGCTATC ACAGCCGAGA CTATCAGTAG TTTTATCGAT
ACCTTGGAAG TGAATGAAGA TGTAAAGGCA GAACTAAAAG TTATAACGCC CGAGAACTAT
ACGGGAGTTT AA
 
Protein sequence
MLTAISPIDG RYADKTTSLV PFFSEMALIR YRVQVEVEYF IALCELPLPQ LADFPKERYT 
NLRRLYQNFT EEEALKVKEI EQTTNHDVKA VEYFIKEAFD KLQLEKYKEF IHFGLTSQDI
NNTAIPLSIK EAVQQVYLPA LEQLLSKLRS LVTQWRDVPL LARTHGQPAS PTRLGKEFEV
FVVRIEQQLQ TLISVPYAAK FGGATGNYNA HKVAYPNIDW KAFGTRFVEE ILGLHHSFPT
TQIEHYDHLA ALFDALKRIN TILIDLNRDV WTYISMDYFK QQIKAGEVGS SAMPHKVNPI
DFENSEGNLG IANALLEHLS AKLPISRLQR DLTDSTVLRN VGVPFGHTLI ALQSTLKGLN
KLLLNEDKIR EDLQDHWAVV AEAIQTILRR EGYPNPYEAL KALTRTNTAI TAETISSFID
TLEVNEDVKA ELKVITPENY TGV