| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1221 |
|---|
| Symbol | |
|---|
| ID | 8367649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | + |
|---|
| Start bp | 1427165 |
|---|
| End bp | 1429891 |
|---|
| Gene Length | 2727 bp |
|---|
| Protein Length | 908 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644983650 |
|---|
| Product | calcium-translocating P-type ATPase, PMCA-type |
|---|
| Protein accession | YP_003141332 |
|---|
| Protein GI | 256820053 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0474] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01517] plasma-membrane calcium-translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000415307 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGATA AACACCATTA CAAAGGTCTT ACCGATGCGC AAGTCCTTGA AAGTCGCCAA
AAATACGGCG AAAACTCCCT TTCATCAGTA GAAGGCGAAC CGCTTTGGAA ACAATTCTTA
GAAAAGTTCA CCGACCCCAT TATCATCATT CTTCTCGTTG CCCTCGTCTT CTCTTTTGGA
GTATCTACTT ATGAATATGT GGTGCATAAT GAAGGTTTCG ATGCTTTCTT AGAGCCCATA
GGGATTCTCT TTGCTGTACT CTTGGCTACA GGTGTCGCTT TCTATTTTGA ACATAAAGCC
AATAAACAAT TCGAAATTCT CAATCAGGTA AACGACGAGA TTTACTACAA AGTCATTCGC
AACGAACACA TTACACAAGT GCTCAAAAAG GATATTGTAG TAGGCGATAT AGTGATTTTG
GAAACCGGTG AAGAAGTACC CGCCGATGGC GAGCTCCTCG AAGCCGTATC AATGCATATC
AACGAGTCTA CCCTTACCGG AGAACCTTTG GTACACAAAA CCACCAATCC ATCCGATTTT
GAGGCAGAAG CTACTTACCC TTCTAACTAC GTTTGTCGCG GTACTTCGGT ATCCGATGGT
CACGGTATTT TTGAAGTGAA AAAGGTCGGC GATGCTACCG AATACGGCAA AGTGTTCGAG
GGGGTTCAGA TAGACAACAC AGTGAAAACT CCCCTCAACG AACAGTTGGA TAAACTCGCA
GGAATGATTA CCAAAATCAG TTACGCTATT GCAATTTTGG TGATTGTAGG TCGTCTTATC
CTATATTTTA CGCTTCCTGC TCATAACATA AACCAAATCG ATTGGATTGA TTTTGGTCAC
TATCTTCTCA ATACAGCGAT GATTGCTATT ACCGTAGTGG TAGTTGCGGT ACCCGAAGGC
TTACCGATGA GTGTTACCCT CAGTTTGGCT TATAGTATGC GCAGTATGAT GGCTACCAAT
AACCTCGTGC GCAAGATGCA CGCTTGTGAG ACGATGGGCG CTACTACCGT GATTTGTACC
GATAAAACGG GTACACTCAC CCAAAACCAA ATGACTATCT ACGAAACTTA TTTCAATCGT
TTTACAGATG AACAATTAGG TGAAAAACTC ATCGCCGAAT CGATGGCGGT GAACTCTACG
GCTTACCTCG ATTTTACTGA TAAAGAAAAA CCAAACGTGC TGGGGAATCC TACCGAAGGA
GCACTCCTAT TGTGGCTCTA CGGCAAAGGA ACCAACTACT TGCCCATACG CGAAGGGAGT
GAAGTGCTTA ACCAACTCAC TTTTTCTACC GAGCGCAAAT ATATGGCTAC TTTGGTGCAA
TCACCAGCGT TGGGCAAACC GGTATTGTAC GTGAAAGGAG CTCCCGAAAT CGTGATGACT
TTTTGCTACG AGGGTGGTAA ATTCCTTTCC GATATTCCTC AAGCCGATTT CGAGGCAAAA
CTATTACAAT ACCAAAACCA AGCGATGCGC ACTATCGGTT TTGCATATAA AGTAATCGAC
GACCCGAATA CGGTAATATC CGAAAATGGT AAGTTAGTGG TAAACGGCTT AAATTTTATA
GGTATTACCG CTATTTCTGA CCCCGTACGC CCTGATGTGC CTGCTTCTAT TGAAGAGTGT
TTGCACGCAG GCATTCAGGT GAAGATTGTA ACCGGTGATA CACCAGGTAC CGCTCGCGAA
ATCGCCCGCC AAATACATTT GTGGGACGAT ACTTGCACCG AGCGTAACCA AATCACCGGC
GTAGAATTTG CCGCAATGAG CGATACCGAA CTCTTAGACC GCATTACCGA CCTACGCGTG
ATTTCACGCG CACGTCCGCT CGACAAAGCA CGCCTCGTGA ACCTATTGCA ACAAAAAGGC
GAAGTTGTAG CCGTAACTGG TGATGGTACC AACGATGCAC CAGCCCTCAA AGCTGCCCAA
GTAGGTCTTT CAATGGGCGA CGGAACCTCA GTAGCCAAAG AAGCTTCCGA TATCACTATC
TTAGATAACT CGTTCAGTAG TATCGGTAAA GCCGTGATGT GGGGGCGTTC ACTCTATTTA
AACATTCAGC GTTTTATCCT CTTCCAGATG ACTATCAATG TGGCAGCGTG TATCATCGTG
CTCATTGGGG CATTCTTAGG GGTAGAGTCA CCGCTTACCG TAACTCAAAT GCTCTGGGTG
AACCTCATTA TGGATACCTT TGCGGCATTA GCGTTAGCAT CCTTACCACC GAGCAACCGC
GTAATGAACG ATAAACCTCG TGCGCGTGGT GCTAATATCA TTACAAAGCC AATGACAAAA
GGCATTTTTG GTGTAGGAGG ATTCTTTGTA GTGTTGCTTT TTGGTTTCAT TCAGTACTTT
AAAAATGAGG ATATCACCAG TCTCACTCAA TTTTCAATTA CTGATTATTT CAGTCATTTC
TTTCACTTCG GAACACCCAA AAACGGACTA TCGGCTTATG AACTTTCCTT GTTCTTCTCG
ATATTCGTGT TCTTGCAATT CTGGAATATG TTCAATGCCA AAGCTTATCG TACCGGCAAG
AGTACTTTTT ATAATATAGG CAAGAGCCAA GGTTTTATAC TTATTGCTAC GGTGATTGTC
ATCGGTCAAG TGTTTATCAC TACTTTTGGT GGGCAGATGT TCAACGTAAC CCCACTCAAG
CTCACCGATT GGACAATCAT CATTGGCGCT ACCAGTCTCG TACTATGGAC AGGAGAAATT
CTCAGAGCCA TAAAAACAGA AAAGTAA
|
|---|
| Protein sequence | MADKHHYKGL TDAQVLESRQ KYGENSLSSV EGEPLWKQFL EKFTDPIIII LLVALVFSFG
VSTYEYVVHN EGFDAFLEPI GILFAVLLAT GVAFYFEHKA NKQFEILNQV NDEIYYKVIR
NEHITQVLKK DIVVGDIVIL ETGEEVPADG ELLEAVSMHI NESTLTGEPL VHKTTNPSDF
EAEATYPSNY VCRGTSVSDG HGIFEVKKVG DATEYGKVFE GVQIDNTVKT PLNEQLDKLA
GMITKISYAI AILVIVGRLI LYFTLPAHNI NQIDWIDFGH YLLNTAMIAI TVVVVAVPEG
LPMSVTLSLA YSMRSMMATN NLVRKMHACE TMGATTVICT DKTGTLTQNQ MTIYETYFNR
FTDEQLGEKL IAESMAVNST AYLDFTDKEK PNVLGNPTEG ALLLWLYGKG TNYLPIREGS
EVLNQLTFST ERKYMATLVQ SPALGKPVLY VKGAPEIVMT FCYEGGKFLS DIPQADFEAK
LLQYQNQAMR TIGFAYKVID DPNTVISENG KLVVNGLNFI GITAISDPVR PDVPASIEEC
LHAGIQVKIV TGDTPGTARE IARQIHLWDD TCTERNQITG VEFAAMSDTE LLDRITDLRV
ISRARPLDKA RLVNLLQQKG EVVAVTGDGT NDAPALKAAQ VGLSMGDGTS VAKEASDITI
LDNSFSSIGK AVMWGRSLYL NIQRFILFQM TINVAACIIV LIGAFLGVES PLTVTQMLWV
NLIMDTFAAL ALASLPPSNR VMNDKPRARG ANIITKPMTK GIFGVGGFFV VLLFGFIQYF
KNEDITSLTQ FSITDYFSHF FHFGTPKNGL SAYELSLFFS IFVFLQFWNM FNAKAYRTGK
STFYNIGKSQ GFILIATVIV IGQVFITTFG GQMFNVTPLK LTDWTIIIGA TSLVLWTGEI
LRAIKTEK
|
|---|
| |