Gene Coch_1219 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1219 
Symbol 
ID8367647 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp1424846 
End bp1425745 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content39% 
IMG OID644983648 
ProductABC transporter related 
Protein accessionYP_003141330 
Protein GI256820051 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID[TIGR03522] gliding motility-associated ABC transporter ATP-binding subunit GldA 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.538125 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGTAG AAGTTCAACA ACTAACAAAA ATATACGGAC AGCAAGTGGC TGTCAATGCT 
ATCAGTTTTC AACTTGAAAA AGGTGAAATT ACCGGCTTTT TAGGACCTAA TGGAGCAGGT
AAATCTACTA CTATGAAAAT GATTACAGGA GCGCTTACCC CTACTGATGG AACAATAACA
GTAAATGGCA TTGATATACT AAAAAATCCT ATTGAAGCAC AGAGAACAAT AGGGTATTTG
CCTGAACACA ATCCGTTGTA TACCGAAATG TACGTGCGAG AATACCTGCG CTTTATGGCT
GAACTATACC CCAAAGTCCC CTCCGATAGG ATTGAAGAGG TAATTGCTCT TACAGGGCTT
TCTTCTGAAA GCGATAAGAA GATAGAGGCG CTCTCCAAAG GCTATCGCCA GCGTGTAGGC
TTGGCTTCTG CGCTTATTCA CGACCCCGAA ATTCTTATAC TCGATGAACC TACCACAGGG
CTCGACCCCA ATCAGCTGGT AGAAATACGC CATATTATCA AAGAGTTAGG TAAGCGTAAA
ACAGTGTTAC TATCTTCTCA TATTATGCAA GAAATTCAAG CTTTGGCTGA CCGTGTGATT
GTATTGCATA AAGGTAACAT CGTGTTAGAT AAGAAAATGA CCGAACTGCA AAACAAAGAA
CAAATTATAG AAGTAGCTTT TGATTTTCGT GTCGAAGAAC GCCTCTTGCG CGCTTTGCCT
AACATAGTAT CAGTGCATAA TGTCTATGAT TTTCTATATC AGTTACAGTT CGATACCTCA
GAAGATATGC GCCCCACTGT ATTTGATTTT GCCAAAGAAA ACGGATTGAA AATACTACAA
ATTAATCACA AGCATAAAGA CTTAGAAGAA ACCTTCATTC AACTAACGGC TAATAATTAA
 
Protein sequence
MSVEVQQLTK IYGQQVAVNA ISFQLEKGEI TGFLGPNGAG KSTTMKMITG ALTPTDGTIT 
VNGIDILKNP IEAQRTIGYL PEHNPLYTEM YVREYLRFMA ELYPKVPSDR IEEVIALTGL
SSESDKKIEA LSKGYRQRVG LASALIHDPE ILILDEPTTG LDPNQLVEIR HIIKELGKRK
TVLLSSHIMQ EIQALADRVI VLHKGNIVLD KKMTELQNKE QIIEVAFDFR VEERLLRALP
NIVSVHNVYD FLYQLQFDTS EDMRPTVFDF AKENGLKILQ INHKHKDLEE TFIQLTANN