| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1203 |
|---|
| Symbol | |
|---|
| ID | 8367626 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 1410990 |
|---|
| End bp | 1412243 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644983627 |
|---|
| Product | sigma54 specific transcriptional regulator, Fis family |
|---|
| Protein accession | YP_003141314 |
|---|
| Protein GI | 256820035 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.477797 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAAAATA TACAAGCTAT AAAACAGCGA TTTAGCATTA TTGGCAACGA CCCTAAGCTA
AATCGCGCTA TCGAAAAAGC CATACAAGTA GCCCCTACTG ACATTTCGGT ACTCATCACC
GGAGAAAGTG GGGTGGGAAA AGAGGTTATA CCGCGCATCA TTCACTCGCT GTCTCTACGC
AAACACGGCA AATACATAGC CGTAAACTGC GGAGCAATCC CCGAAGGGAC TATTGATTCG
GAACTTTTTG GTCACGAAAA AGGCGCTTTT ACGGGAGCTA CCGCTACCCG CAGTGGATAT
TTTGAGGAAG CCGATGGCGG GACTATCTTC TTGGACGAGG TAGGTGAATT GCCCCTCACT
ACCCAAGTGC GCCTCTTGCG GGTGCTCGAG AACGGCGAGT TCATAAAAGT AGGTTCGTCG
GTAGTGCAGA AGACAAATGT ACGCATTGTG GCAGCTACCA ATGTGCAAAT GCAAGAAGCT
ATTAAAAAAG GACGTTTTCG CGAAGACCTT TATTACCGAC TCAGCACAGT AGAGATACAT
TTGCCTCCTT TGCGCGAACG CAAAGACGAT ATCCACTTGC TTTTCCGCAA GTTTGCTTCG
GATTTTGCCG AGAAATACAA AATGCCTCCT GTGAAGCTCA GCGAAGATGC GGTACATCTG
CTCACGAACT ACCGTTGGAG CGGGAATATC CGTCAGTTGC GGAATGTAGC CGAGCAGATT
TCGGTACTTG AACAGCGCAG GGATATTACG GCGAGTATTT TGCGCACCTA CTTACCCGAT
GAGGGTAGCA ATCTACCACA GGTTGTACCT CAGCAAGCGC GCCAGGATAG TGATTTTAGC
AACGAACGCG AGTTACTTTA CAAGGTGCTT TTCGATATGA AATCTGACCT CAACGACTTG
AAAAAGCTTA CCCTTGAACT GTTACAACAC GGCAATTCAG CCCAAGTACA ACAGGACAAC
GAGGGACTTA TTCACCGCAT CTACGGCAAT GATTCACACA AGAATGAGGC GAGCTCTCCG
GCTTATTCTA TCATTCCCGT ACCTCCTACC GAGAAGGAAA TCCTATCTCA CGAAGAGGTG
TACGACTATG AGGAAGCTGC GGAAGAAGAG CGTTTTTCAC TTCAAGAGCA AGAGCGCGAG
ATGATACGCA AGTCGTTAGA ACACAACGGT GGCAAGCGCA AGGAAACCGC CAAAGCCTTG
GGGATTTCGG AGCGGACGCT ATATCGCAAA CTAAAACAGT ATAATATGAT TTAG
|
|---|
| Protein sequence | MENIQAIKQR FSIIGNDPKL NRAIEKAIQV APTDISVLIT GESGVGKEVI PRIIHSLSLR
KHGKYIAVNC GAIPEGTIDS ELFGHEKGAF TGATATRSGY FEEADGGTIF LDEVGELPLT
TQVRLLRVLE NGEFIKVGSS VVQKTNVRIV AATNVQMQEA IKKGRFREDL YYRLSTVEIH
LPPLRERKDD IHLLFRKFAS DFAEKYKMPP VKLSEDAVHL LTNYRWSGNI RQLRNVAEQI
SVLEQRRDIT ASILRTYLPD EGSNLPQVVP QQARQDSDFS NERELLYKVL FDMKSDLNDL
KKLTLELLQH GNSAQVQQDN EGLIHRIYGN DSHKNEASSP AYSIIPVPPT EKEILSHEEV
YDYEEAAEEE RFSLQEQERE MIRKSLEHNG GKRKETAKAL GISERTLYRK LKQYNMI
|
|---|
| |