Gene Coch_1183 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1183 
Symbol 
ID8367605 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp1391240 
End bp1392361 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content44% 
IMG OID644983607 
ProductDNA replication and repair protein RecF 
Protein accessionYP_003141295 
Protein GI256820016 
COG category[L] Replication, recombination and repair 
COG ID[COG1195] Recombinational DNA repair ATPase (RecF pathway) 
TIGRFAM ID[TIGR00611] recF protein 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.00164356 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGTTTC TCAAACAAAT ATCGGTCGTA AACTACAAGA ACATACTCTC ACAAGCGTAT 
GCCTTTAGCC CTACTATCAA CTGTTTTGTA GGAGATAATG GTGTAGGGAA AACGAATCTG 
CTTGATGCTA TTTATCACTT AGGTATGGCA AAGAGCTACT TTACTACTTC GGCAGTGCAG 
AACGTACGCC ACGGCGAGGA GTTTTATCTT ATAGAAGGAC AGTTTCGGCA AGAAGAACGT 
GAAGAACAGA TAGTGTGTAG CCTTAAAAAA GGACAGAAGA AAGTGATGAA ACATAACGGT 
AAAGCCTATG AACGTCTGGC TGACCATATA GGTAAATACC CTATGGTGCT CATTTCACCT 
TCCGACCGCG ACTTGATAGT AGAAGGTAGT GAAACACGTC GTAAGTTTTT GGATAGTGTG 
ATTTCGCAAA CTGATAGGGC TTACTTAGAA CTGCTCTTGC GCTACAATCG CACGCTCTTG 
CAACGCAATA CGTTACTGAA ACAAATGACA GAAGGAGGCG TTTTCTCTTT AGAGACTTTG 
CACATTTACG ACGAGCAGTT GGCACCCTTA GGACAACACA TTTATGAGAA ACGGCGAACT 
TTTATGGAAG AGTTTTTGCC TATCTTTAGC GAGCAGTACG CGTATATTTC GGGGGGTAAG 
GAACGAGTGA GTTTGCATTA CGACAGTAGT TTGCACCAAA GTGATTTGGC TACCCAGCTT 
GTCGAAAATA CTGAGCGAGA CCGCAGTGCG CAATACACTA CCGCAGGTAT TCACAAGGAC 
GATTTGCTTT TTGAGATTGA GGGCTACCCG ATGAAGAAGT ATGGCAGTCA GGGGCAACAG 
AAGTCGTTTT TGATAGCCTT AAAGCTATCG CAGTTTGAAG TGTTGAAGCA ATCGTTAGGG 
ATTACGCCCA TAGTGCTTTT AGATGATATT TTTGATAAGC TCGACGATAC TCGCGTAACG 
CAGTTGGTGC AGTTGGTTAC TCAAAAACAT TTCGGACAGC TTTTTATTAC CGATACTCAT 
CCGCAACGCA CCGAAGATGT AGTAAAGCAA ACGGGACTGG CGTATGAGAT GATTCAAATA 
GGTGCGAGCC GCACGGGCAG TAAGAGCCAT AAGAGCAGAT AA
 
Protein sequence
MMFLKQISVV NYKNILSQAY AFSPTINCFV GDNGVGKTNL LDAIYHLGMA KSYFTTSAVQ 
NVRHGEEFYL IEGQFRQEER EEQIVCSLKK GQKKVMKHNG KAYERLADHI GKYPMVLISP 
SDRDLIVEGS ETRRKFLDSV ISQTDRAYLE LLLRYNRTLL QRNTLLKQMT EGGVFSLETL 
HIYDEQLAPL GQHIYEKRRT FMEEFLPIFS EQYAYISGGK ERVSLHYDSS LHQSDLATQL 
VENTERDRSA QYTTAGIHKD DLLFEIEGYP MKKYGSQGQQ KSFLIALKLS QFEVLKQSLG 
ITPIVLLDDI FDKLDDTRVT QLVQLVTQKH FGQLFITDTH PQRTEDVVKQ TGLAYEMIQI 
GASRTGSKSH KSR