Gene Coch_1148 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1148 
SymbolrplD 
ID8367570 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp1371922 
End bp1372551 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content38% 
IMG OID644983574 
Product50S ribosomal protein L4 
Protein accessionYP_003141262 
Protein GI256819983 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0088] Ribosomal protein L4 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.0000671055 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGTAG CAGTATTAAA CATACAAGGA AAAGAAACAG GTAGAAAGGT AACCCTTTCT 
GATGCTGTGT TCGGTATTGA GCCTAACAAT CACGTAGTAT ACTTAGATGT TAAACGCTAT 
TTAGCTAACA AACGTCAAGG TACTCACAAG GCTAAAGAAA GAAACGAAGT TGCTGGAAGT 
ACTCGCAAAA TCAAAAAACA AAAAGGTACT GGTACAGCTC GTGCAGGTAG CGTAAAATCT 
CCTGTATTTG TGGGTGGTGG ACGCATATTC GGTCCTCGTC CTAAAGACTA TACACAAAAA 
CTTACTAAAA ACGTAAAACG CTTGGCTCGC CGTTCTGCCC TCAGCGCTAA AGTGCAAAAC 
CAAGCCCTCG TTGTAGTTGA AGATTTGAAT TTCGACGCTC CAAAAACTAA AGATTTCACC 
GCAGTTGTAA AATCTTTGGG CTTAGAAAAT AAAAAATCAC TTTTTGTGTT GCCAAATACA 
AATAATAACG TATATTTGTC CTCTCGTAAT GTACCTACTT CAAGCGTAGT AACTGCTTCA 
GAATTAAACA CTTATCAATT AGTGAACGCT TCAAATGTAG TACTTACTGA GAGCTCAGTA 
GCAGTTTTAG AGTCAATTTT AACAAAATAA
 
Protein sequence
MEVAVLNIQG KETGRKVTLS DAVFGIEPNN HVVYLDVKRY LANKRQGTHK AKERNEVAGS 
TRKIKKQKGT GTARAGSVKS PVFVGGGRIF GPRPKDYTQK LTKNVKRLAR RSALSAKVQN 
QALVVVEDLN FDAPKTKDFT AVVKSLGLEN KKSLFVLPNT NNNVYLSSRN VPTSSVVTAS 
ELNTYQLVNA SNVVLTESSV AVLESILTK