Gene Coch_1140 details

Gene Information

• Locus tag: Coch_1140
• ID: 8367562
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Capnocytophaga ochracea DSM 7271
• Kingdom: Bacteria
• Replicon accession: NC_013162
• Strand: +
• Start bp: 1361097
• End bp: 1363049
• Gene Length: 1953 bp
• Protein Length: 650 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 644983566
• Product: RagB/SusD domain protein
• Protein accession: YP_003141254
• Protein GI: 256819975

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAGA TATATAAAAA TATAATCATA GCTACCTTTT CGGTAGGGCT TATAGGATGT 
AATAAGTTTT TGGATAGAGA GCCATTATCA AACATCACTC CTCAACAGTA TTTCAATACC 
GAATCGGATA TGGCGGCATA TACCATTAGT TATTATAATT TTCCTACTCA CGGAGGATAT 
AGTATAGGGC GATTCAAAGC AGATAATGGT ACTGACAACC AAGCCGATAG AAGTCCTAAT 
GCTGCATGGC TAAAAGGACA ATGGCACGTA CCTACTGGAA CAGATGGGTA TGATTTTGGG 
AATATCAGAG CTATCAACTA TTTTATAGCA GAAGTAACCC CAAAAATAGA GGAAGGAAAA 
GTAGTAGGAA ATCCTGCTAA TATCAACCAC TACTTAGGTG AAGCATACTT TTTAAGAGCT 
TATGAATATT TTAATCGTTT AGAAAATTAC GGAGATTTTC CTATTATAAA AACAGTACTT 
CCCGATAATG AAGACGAGCT AATAGAAGCT TCCAAACGTC GCCCTCGCAA TGAGGTAGCC 
CGCTTTATCT TAGAAGATTT AGACAAAGCT ATCAGTTTAT TAAAATCAAG TCCTGTGGAA 
GGTAAAAATC GTATCAGCAA AGAAGTTGCG CAGCTTTTCC GCTCGCGTGT AGCTCTTTTT 
GAAGGTACTT GGCTCAAATA TCACAAAGGT ACAGCCCACG TGCCAGGAGG TGCTGGTTGG 
CCAGGGGCTA ATATGCCTTA CTTATCAGGA TTTTCTATTA ACATAGACAC TGAAATTAAT 
TACTTTTTGA CAGAAGCAAT GACTTCTGCC AAAGCTGTAG CCGATGCTTT TCCATTAGTA 
ACCAACAACC ACAATACTAC TGGTGCTGAT GTATTTAGTA ATCCTTATTT CAAAATGTAT 
GGAGACAATA GTCTATCAGG CTATTCAGAA GTGTTGTTTT GGAGACAGTA CAGTGCTGAA 
AAAAGTGTAG GACATTATAC CAATGGTTTC TTGACTGGTG GTGGTAACAG TGGGTATACA 
CGTGGTTTTG TAGATACTTT CTTGATGAAA AACGGTTTGC CTATTTACGC CAATGGTTCT 
GGCTACCAAG GTGATACCGA TCTTACTACT GTAAAAGTAA ACAGAGATGA GCGCTTGCAA 
CTCTTTATGC GTGTACCAGG TGATTATTTG GCTGTTACTC AGCAAGTGAA TAACTATCCT 
GACATTATCA ACTCAATAGT TGAAAGAAAA TCGGTAACAG GATATGACGT AAAAAAAGGA 
TTGAATGGCG AAGCTAAGTA TCTTACCGAT GCAGTGCTTA CTGAGACAGG TTGTATAGTA 
TTCCGTGCTG CCGAGGCTTA CCTTAACTAT ATTGAAGCTT GCTATGTAAA AAACAATAGC 
CTTGATAATG ATGCTAGCCG TTATTGGAAA GCTTTACGCG CTCGTGCTGG AGTCAGTGAG 
GATTATAGTG CTACTATAGC CGCTACCGAC CTTAACAAAG AAAACGACTG GGCGGTCTAT 
TCAGCAGGAC AAAAGGTAGA TGCTACTTTG TATAATATTC GTCGTGAACG CCGTTGTGAG 
TTCATAGCTG AGGGAATGCG CAATAACGAC CTTCGTCGTT GGCGCGCTAT GGATCAGCTC 
CGCAATTATC AAATAGAAGG AATGAATCTT TGGACAAGTA TGTATGATAA GGATACTTAT 
AAGAATACTG ATGGTACTTC TAAATTAATA GCTTTACCTG CTGCGAGTCC TAATATATCG 
GCAAAAGCGT TGAGCGTGTA CATTCGTCCT TACCAAATTA TACAACAAAA TAACTTGTAT 
TACAATGGTA TTACTTGGAC AAAAGCACAC TACCTATCAC CTATTGGTTT TGAAAACTTC 
TTGCGTACTT CCAAAGGCGG CAATATAGCC ACTTCGGTTG TTTATCCAAA TCCATATTGG 
CCAGCACAAG CCGATGGTAT TCCTACTGAA TAA 

 

Protein sequence

MKKIYKNIII ATFSVGLIGC NKFLDREPLS NITPQQYFNT ESDMAAYTIS YYNFPTHGGY 
SIGRFKADNG TDNQADRSPN AAWLKGQWHV PTGTDGYDFG NIRAINYFIA EVTPKIEEGK 
VVGNPANINH YLGEAYFLRA YEYFNRLENY GDFPIIKTVL PDNEDELIEA SKRRPRNEVA 
RFILEDLDKA ISLLKSSPVE GKNRISKEVA QLFRSRVALF EGTWLKYHKG TAHVPGGAGW 
PGANMPYLSG FSINIDTEIN YFLTEAMTSA KAVADAFPLV TNNHNTTGAD VFSNPYFKMY 
GDNSLSGYSE VLFWRQYSAE KSVGHYTNGF LTGGGNSGYT RGFVDTFLMK NGLPIYANGS 
GYQGDTDLTT VKVNRDERLQ LFMRVPGDYL AVTQQVNNYP DIINSIVERK SVTGYDVKKG 
LNGEAKYLTD AVLTETGCIV FRAAEAYLNY IEACYVKNNS LDNDASRYWK ALRARAGVSE 
DYSATIAATD LNKENDWAVY SAGQKVDATL YNIRRERRCE FIAEGMRNND LRRWRAMDQL 
RNYQIEGMNL WTSMYDKDTY KNTDGTSKLI ALPAASPNIS AKALSVYIRP YQIIQQNNLY 
YNGITWTKAH YLSPIGFENF LRTSKGGNIA TSVVYPNPYW PAQADGIPTE