Gene Coch_1112 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1112 
Symbol 
ID8367534 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp1313690 
End bp1314829 
Gene Length1140 bp 
Protein Length379 aa 
Translation table11 
GC content41% 
IMG OID644983540 
ProductUDP-N-acetylglucosamine 2-epimerase 
Protein accessionYP_003141228 
Protein GI256819949 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0381] UDP-N-acetylglucosamine 2-epimerase 
TIGRFAM ID[TIGR00236] UDP-N-acetylglucosamine 2-epimerase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.434566 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAT TAAAAGTAGT AACTGTAGTG GGCACTCGCC CCGAAATTAT CCGTTTATCT 
CGCGTCCTCG CAGCCTTAGA TGCTTCTGAG GCTATAGAAC ATATCATTGT GCATACTGGT 
CAAAATTACG ACTATGAGCT CAATCAAATC TTTTTTGAAG ATTTACAACT TCGCAAGCCC 
GATTATTTCC TCGAAGCAGC AGGTAAAACT GCTACCGAGA CTATTGGTAA CATCCTCATT 
AAAATAGACC CCGTATTAGA TGAACTCCAG CCCGATGCTT TTTTAGTGTT AGGCGATACT 
AATTCGTGCC TGTGTGCGAT TCCAGCCAAG AAAAAACACA TCCCTATTTT CCATATGGAA 
GCAGGCAATC GCTGTTTCGA CCAACGAGTA CCCGAGGAAA CTAATAGAAA AATCGTAGAT 
CATACTTCAG ACGTCAATCT CACCTATTCA AGCATTGCTC GTGAGTACCT CCTCAGAGAA 
GGACTTTCTG CCGATAGAGT TATCAAAACA GGATCTCCTA TGTATGAAGT GCTACACTAC 
TATCTACCTG AGATCCAAAA ATCAAAAGTG TTGCAAACTT TAGGTTTAGA GGAAGGTAAA 
TTCTTTGTAG TATCAGCCCA TCGCGAAGAA AATATCAATT CCGAGAAAAA CTTTACTAAC 
CTGATGAATG CTCTCAATAC AATCGCCAAG CAGTATCATT ACCCCATCAT TGTCTCTACT 
CACCCGCGCA CTCGCAATAT GATAGACAAG AGACAAATAG CAATGCGCCC CGAAATACAA 
TTCCTAAAAC CTTTAGGATT TCACGATTAC AATGCTTTAC AACAGAAAGC TTATGTAGTA 
CTAAGTGATT CCGGTACGAT TTCCGAGGAA TCTTCTATAC TGAATTTTCG CGCCTTAAAT 
CTTCGTGAAG CTCACGAACG TCCCGAAGCG ATGGAAGAAG CCTCTGTAAT GATGGTAGGC 
TTGCACTCTG AACGTATTAT GCAAGGGCTC GTACACGTAT TGCAACAAAC GGTAGGCGAA 
GACCGCAACT ATCGCCCTGT AGCCGATTAT TCAATGCCTA ATGTATCAGA AAAAGTAGTG 
CGTATCATCA TTTCTTATAC TGATTATGTA AAAAGAGTCG TTTGGCAAGA AAATATATAG
 
Protein sequence
MKKLKVVTVV GTRPEIIRLS RVLAALDASE AIEHIIVHTG QNYDYELNQI FFEDLQLRKP 
DYFLEAAGKT ATETIGNILI KIDPVLDELQ PDAFLVLGDT NSCLCAIPAK KKHIPIFHME 
AGNRCFDQRV PEETNRKIVD HTSDVNLTYS SIAREYLLRE GLSADRVIKT GSPMYEVLHY 
YLPEIQKSKV LQTLGLEEGK FFVVSAHREE NINSEKNFTN LMNALNTIAK QYHYPIIVST 
HPRTRNMIDK RQIAMRPEIQ FLKPLGFHDY NALQQKAYVV LSDSGTISEE SSILNFRALN 
LREAHERPEA MEEASVMMVG LHSERIMQGL VHVLQQTVGE DRNYRPVADY SMPNVSEKVV 
RIIISYTDYV KRVVWQENI