Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_1021 |
Symbol | |
ID | 8367441 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | - |
Start bp | 1204007 |
End bp | 1205755 |
Gene Length | 1749 bp |
Protein Length | 582 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644983447 |
Product | RagB/SusD domain protein |
Protein accession | YP_003141137 |
Protein GI | 256819858 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00103937 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAGC TCATTTATAC CACCTTAATT CTCGTCTTTT TCTCACAAGT ATTTTCTTGT AAGTTAGAAG ACCACTTCCT CGAAAAGAGT TTAGGAAGCG ATGTGAATGT CGATTCTATC TTTTCGAGCA AACAGAAATC TCTCTCGGCT ATTGCCCAAG CCTACGCGAT GAGCCTGCAA TCGGGTATTA CTTTGCGTTA CGACAATGGG CGCATTAGCG GACTGAAAGC GGGAACGCTC TCTCACCTAT CGGGAGAGGT GAACGATGTG AAATTCAGTT GGGAAGACAC CTATAAAATT CAACGTTCTG GAATGGTAGC CAGCGACTCC GATGGCAAAG CATTGAGTTC CGATGGTTTC GTGTTCAACT ACCAATCTAT CCGTCAGTGC TATTTGGTGA TTGAGAATAT CGATAAAGTC CCCGATCTTA CTGAGGTACA AAAGAAAAGT ATCAAAGCCG AAATGTATAC CCTCATCGCC TACCGATATG AGGAGATGTT CAAACGTTAC GGCGGGGTGC CTATTATAGA AGGTACACTT TCAGTAGATT CCGACCTGAA TATTCCTCGC GCTACTTTGC GCGCTACCTT AAACCATATT ATTGCCCTTT GCAACAAAGC TATTAGCGAC CTGCCCGATA GCTACAATGC TTCGGAAAAA GGACGTGTAA CCAAAGGTAT CCCAATGTGT ATCAAAGCCG AAGCATTGAT GTACGCCGCG CGTCCGCTGT TCAATAGCAA TATGCCTTAT ATGAGTTTGG GCGGCAATAA CAACCTGATT TGTTTTGGTA CACAAGACGC TTCGTTGTGG CAACAAGCCA TAGAGGCTAA TGAGCAAGTG ATACGTTGGG CAACTGCCAA TGGTTATCAA ATCATCAATA CGGGCAACCC TTTAGCCGAT TACGGTACAG CAGTAGCAAC CCCTAACAAC CGAGAAGTAC TCCTCGCCTT TAAATCACAA AGTTTTATAG AGGCTTATAA CCCTCACAGC CAACCAGGAG GGGCAAATTC TATGAGTTAC TTGCAACTTA CCCAATACTA CAAAACTGAT GGTACCAACC AAACGTGGAC GGGTGAAAAC TGGGAAAGCT ACGCAACTTA TGTGAACAAG TGCAATGAGT TAGAAGCCCG TTTTAAAGCC TCAGCAGCGA TTGCAGGGCA ACAAGCGTGG AACAACCCTA GTTCGCATTA CTGGTCGAGT GAGACTTTGG CAAATGCCTC TACTTGGGAA AAGAGAGCAG GCAGTGAAGG CGCAGGACGC CGTGTGAAAT TCTTCTATAT GGCTGATACC CGCGATTGGT TTGAATTCCC TTTGTACCGT TTGGCTGAGT TCTATTTGAA TCTCGCCGAA GCCTATAACG AAGCAGGTAA TCCTGCTCAG GCTTTGCAAA ACCTAAATGT TATCCGCTCG CGTGCAGGGC TACCCAATGT TACTGAAACA GGACAAGACG TTTTGCGCAA ACTCGTGCAA AGAGAGTGGG CGGTAGAGTT CTATGAAGAA AATCACCGTT ATTTCGATGT AAAACACTGG AAACTCACCG ATATTGCCAA TGGTATCATT GGAGGGGAAA AGAAAGGAGT AGTTTTTGAG TACGCCCCAG GAAAATCGGA AGGGTGGAAT GCGTGGGATT ACGCTTCTTA TGCTGTGAAA CCTGTCTATA CAGGGTATTG GGACAACAGT CAGTACTTAG AGCCTTTCCC TCAATCGGAA GTGAACAAAG GCTACTTGAT ACAAAACCCT GGGTACTAA
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Protein sequence | MKKLIYTTLI LVFFSQVFSC KLEDHFLEKS LGSDVNVDSI FSSKQKSLSA IAQAYAMSLQ SGITLRYDNG RISGLKAGTL SHLSGEVNDV KFSWEDTYKI QRSGMVASDS DGKALSSDGF VFNYQSIRQC YLVIENIDKV PDLTEVQKKS IKAEMYTLIA YRYEEMFKRY GGVPIIEGTL SVDSDLNIPR ATLRATLNHI IALCNKAISD LPDSYNASEK GRVTKGIPMC IKAEALMYAA RPLFNSNMPY MSLGGNNNLI CFGTQDASLW QQAIEANEQV IRWATANGYQ IINTGNPLAD YGTAVATPNN REVLLAFKSQ SFIEAYNPHS QPGGANSMSY LQLTQYYKTD GTNQTWTGEN WESYATYVNK CNELEARFKA SAAIAGQQAW NNPSSHYWSS ETLANASTWE KRAGSEGAGR RVKFFYMADT RDWFEFPLYR LAEFYLNLAE AYNEAGNPAQ ALQNLNVIRS RAGLPNVTET GQDVLRKLVQ REWAVEFYEE NHRYFDVKHW KLTDIANGII GGEKKGVVFE YAPGKSEGWN AWDYASYAVK PVYTGYWDNS QYLEPFPQSE VNKGYLIQNP GY
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