Gene Coch_0992 details

Gene Information

• Locus tag: Coch_0992
• Symbol: thrS
• ID: 8367412
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Capnocytophaga ochracea DSM 7271
• Kingdom: Bacteria
• Replicon accession: NC_013162
• Strand: +
• Start bp: 1163174
• End bp: 1165117
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 644983418
• Product: threonyl-tRNA synthetase
• Protein accession: YP_003141108
• Protein GI: 256819829
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0441] Threonyl-tRNA synthetase
• TIGRFAM ID: [TIGR00418] threonyl-tRNA synthetase

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTAAAA TCACACTACC CGACGGCTCT GTAAAAGAGT ACCAAAGTGG GATTACTCCC 
GCCGAAATCG CAGCCTCTAT CAGTGAGGGA CTGGCGCGTA ACGTCCTTTC TGCCAGCTTC 
AATGGCAAAA CCATAGAAAC CGTTACCCCC CTGACGACCG ACGGTAGTTT AACATTATAC 
ACTTGGGATA GTCCCGAAGG TAAAAAAGCT TTCTGGCACT CCTCAGCGCA CATCTTGGCA 
CAAGCGCTCG AAGAGCTCTA TCCCGGTATC AAGCTCACCA TAGGTCCTGC CATCGCTAAT 
GGTTTCTATT ACGATGTCGA TTTCAACGGC AAACCTATTT CCGAAAAAGA TTTTCCTGCT 
ATCGAAGCTA AATTCTTGGA AATAGCACGA GGCAAACACC CTTTCAAAAT GCGCCCTGTG 
AGCAAAGCCG AAGCCTTGTC GTACTACGCA GGCAAAAATG AGTACAAAAC TGAACTTATC 
GAAGCCCTCG AAGATGGTAC GATCACCTTC TGCGACCATA GTACCTTCAC CGACCTTTGT 
CGTGGGGGGC ATATCCCTAA CACAGGCTTT GTAAAAGCCG TAAAAGTACT CAGCGCTGCT 
GGGGCTTATT GGCGTGGTGA TGAGCACAAC CCACAACTCA CTCGTGTGTA TGCTATCTCA 
TTCCCTAAAC AAAAAGAACT CACCGAATAC CTCGAACTGC TTGAAGAAGC TAAAAAACGC 
GACCACCGCA AACTCGGTAA AGAACTTGAA CTCTTTACCT TCTCTAACAA GGTAGGACAA 
GGCTTACCTC TCTGGTTACC CAAAGGAGCT GCCTTGCGCG AACGCCTCGA AGCCTTCTTG 
CGCAAAGCCC AAAAACAAGC CGGTTACGAG CAGGTAGTTA CCCCACATAT CGGTCATAAG 
AATTTATATG TAACCTCAGG TCACTGGGAT AAATACGGAA AAGATAGTTT CCAACCCATT 
GCCACCCCTA ACGAAGGCGA GGAGTATTTA CTAAAACCGA TGAACTGTCC GCATCACTGC 
GAGATATACA ATTCACACCC TTGGAGTTAT AAAGATTTGC CAAAGCGTTT TGCCGAGTTC 
GGTACAGTAT ATCGCTATGA ACAAAGTGGC GAGTTACACG GCTTAACCCG CGTGCGTTGC 
TTTACCCAAG ACGATGCGCA CATCTTCTGT ACTCCTGAAC AGTTAGACGA CGAGTTCAAA 
CACGTAATCG ATTTGGTGCT CTATGTATTT GGTTCTCTTG GATTCGACAA TTTTACCGCA 
CAAGTATCGT TGCGCGACCC CGAAAACCCT ACCAAGTACA TCGGTAGTGA TGAGAATTGG 
GCAAAAGCCG AAAATGCCAT CATCAACGCT GCGAAAGAAA AAGGCTTGAG CTATGTAATC 
GAAACAGGTG AAGCCGCTTT CTACGGACCC AAACTCGACT TTATGGTGAA AGATGCCTTA 
GGCAGAAGCT GGCAACTCGG TACCATTCAG GTAGATTACA ACCTCCCAGA GCGTTTCGAC 
CTTTGGTATA AAGGCGCTGA TAATGAAATG CACCGCCCTG TAATGATTCA CCGTGCGCCT 
TTCGGAAGTA TGGAACGTTT TGTAGCCATT TTATTGGAAC ACACTGCCGG AAACTTCCCA 
TTATGGCTCA ACCCGAGTCA AGCTATCGTA CTATCATTGA GTGAAAAATA TGAAAATTAT 
GCTCAAAAAG TTTTGAGATT GTTAGAAAAT TCCGATATTC GCACCCTGAT AGACAATCGC 
GCCGAAACTA TGGGCAAAAA AATACGCGAA GCCGAGACCC AAAAAATCCC GTATATGCTC 
ATTGTAGGCG AGAATGAAGA GAAAGAAGGC ACCGTATCAG TGCGCAAACG CGGTGGTGAG 
GATTTAGGAA GTATGAGCGT AGAAGCCTTT GCCAAACTCA TCAACGACGA AGTCGCTAAG 
TCAATTAAAC AATTTGCTAA TTAG 

 

Protein sequence

MIKITLPDGS VKEYQSGITP AEIAASISEG LARNVLSASF NGKTIETVTP LTTDGSLTLY 
TWDSPEGKKA FWHSSAHILA QALEELYPGI KLTIGPAIAN GFYYDVDFNG KPISEKDFPA 
IEAKFLEIAR GKHPFKMRPV SKAEALSYYA GKNEYKTELI EALEDGTITF CDHSTFTDLC 
RGGHIPNTGF VKAVKVLSAA GAYWRGDEHN PQLTRVYAIS FPKQKELTEY LELLEEAKKR 
DHRKLGKELE LFTFSNKVGQ GLPLWLPKGA ALRERLEAFL RKAQKQAGYE QVVTPHIGHK 
NLYVTSGHWD KYGKDSFQPI ATPNEGEEYL LKPMNCPHHC EIYNSHPWSY KDLPKRFAEF 
GTVYRYEQSG ELHGLTRVRC FTQDDAHIFC TPEQLDDEFK HVIDLVLYVF GSLGFDNFTA 
QVSLRDPENP TKYIGSDENW AKAENAIINA AKEKGLSYVI ETGEAAFYGP KLDFMVKDAL 
GRSWQLGTIQ VDYNLPERFD LWYKGADNEM HRPVMIHRAP FGSMERFVAI LLEHTAGNFP 
LWLNPSQAIV LSLSEKYENY AQKVLRLLEN SDIRTLIDNR AETMGKKIRE AETQKIPYML 
IVGENEEKEG TVSVRKRGGE DLGSMSVEAF AKLINDEVAK SIKQFAN