| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0978 |
|---|
| Symbol | |
|---|
| ID | 8367397 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 1146735 |
|---|
| End bp | 1148030 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644983403 |
|---|
| Product | protein involved in gliding motility GldE |
|---|
| Protein accession | YP_003141094 |
|---|
| Protein GI | 256819815 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1253] Hemolysins and related proteins containing CBS domains |
|---|
| TIGRFAM ID | [TIGR03520] gliding motility-associated protein GldE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTTTT TAAGCATTGA CGTGGGTATC GTTATTCAAT TTGCAGTGTT TATACTATTA
TTATTCTGCT CTGCTCTTAT CTCAGGAGCT GAGGTAGCTC TCTTTTCGCT TACTCCTGCT
GAGATTGAAA CACTCAAAGA AGAAAAAACG CCTACCGGCA ATATTATAGC CAAGCTCACA
GAGAATCCTA AAAAGCTATT GGCAACGGTA CTTATTGCCA ATAACTTGGT AAACATCTCT
ATCGTACTCC TCTTTGTAGA TTTAGGCGAC TTCCTCTTCG GGGGAATTAC AACTCCTTGG
GTACGGGCAG TACTCGATGT GGGTGTGGTT ACCTTTGTGC TTTTGCTCTG CGGTGAAATC
CTACCTAAAA TCTACGCCAA TCGCAACAAT ATTTTGTTTT CACAGCGCGT AGCTTACTTC
ATTTATATCC TCGACTCCTT CTTTACGCCC ATCAGTATGC CGATGAAAAA CTTTACCGTA
TGGATACAAA AAAAATTGGG CAAGCAGAAA AGCAATATTT CAGTAGGACA ACTCTCGCAA
GCCTTAGAAC TCGCCTCCGA AGAAGATACC ACCAACGAGG AAAAGAAGAT ATTAGAGGGT
ATTGTTTCTT TTGGCAATAC CGAAACCCGC GAAGTAATGG TACCCCGTGT AGATATCTTT
GCTCTCAGCG AAGAGCTCTC ATATCAGGAG TTGCTAAACG AAATCGTGGC GATAGGCTAT
TCGCGCATTC CCGTATACCA CGAGAATTTA GACCATATTA CAGGGGTAAT TTACATCAAA
GACCTCTTGC CACATTTAGA CAAAACTGAT TTCGACTGGA ATAGTGTGAA ACGCAATGCT
TTCTTCGTTC CCGAAAACAA GAAATTAGAC GATTTGTTGA GCGAGTTTCA AGAGAAGAAG
ATACACCTCG CTGTTGTAGT AGATGAGTAC GGTGGTACTT GTGGAGTGAT TACCTTAGAG
GATATCATAG AAGAGATTGT GGGAAATATC AACGATGAGT TTGACGATGA AGATGTAACA
CACTTCAAAA TCAATGATAA TGTCTTTATT TTTGAAGGAA AAACGGTATT GAAGGACTTC
TATCGCATTC TTGAATTTAC TGATGAAGAA GAGGCTCTAT TTGACGAGAA TCGCGGTGAT
GCCGAAACGC TTGCAGGCTT TCTCTTAGAG ATTTCGGGCA ACTTTCCTCA GAAAGGAACT
CCTATTCTCT TTGGCAACTA TAAATTCATT GTAGAAGCTT TTGACAAGAA ACGTATCAAG
CAAATCAAAA TCATTAGAAC GAATAATCCC CAATAA
|
|---|
| Protein sequence | MPFLSIDVGI VIQFAVFILL LFCSALISGA EVALFSLTPA EIETLKEEKT PTGNIIAKLT
ENPKKLLATV LIANNLVNIS IVLLFVDLGD FLFGGITTPW VRAVLDVGVV TFVLLLCGEI
LPKIYANRNN ILFSQRVAYF IYILDSFFTP ISMPMKNFTV WIQKKLGKQK SNISVGQLSQ
ALELASEEDT TNEEKKILEG IVSFGNTETR EVMVPRVDIF ALSEELSYQE LLNEIVAIGY
SRIPVYHENL DHITGVIYIK DLLPHLDKTD FDWNSVKRNA FFVPENKKLD DLLSEFQEKK
IHLAVVVDEY GGTCGVITLE DIIEEIVGNI NDEFDDEDVT HFKINDNVFI FEGKTVLKDF
YRILEFTDEE EALFDENRGD AETLAGFLLE ISGNFPQKGT PILFGNYKFI VEAFDKKRIK
QIKIIRTNNP Q
|
|---|
| |