| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0972 |
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| Symbol | |
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| ID | 8367391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 1140988 |
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| End bp | 1142733 |
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| Gene Length | 1746 bp |
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| Protein Length | 581 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644983397 |
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| Product | thiamine pyrophosphate protein TPP binding domain protein |
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| Protein accession | YP_003141088 |
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| Protein GI | 256819809 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAAA ATGTATCCGA CCAATTGGTC GAAATGTTAG TACAAGCAGG CGTAAAAAGA
GTATATGCCA TTACCGGCGA TAGTCTCAAC CCTGTGAACG ACGCCATCCG TCGCGATGGT
CGCCTTGAGT GGATACACGT CCGCCACGAG GAATCAGCCG CTTATGCAGC CTCTATGGAC
GCCGAACTAA ACGGCATAGG CTGTTGTATG GGAAGTTCAG GACCTGGACA CGTGCACCTT
ATCAACGGAC TCTACGACGC CAACCGCTCA GGCAACCCTG TGATTGCCAT TGCCAGCACC
TGCGCCACCC ATAAATTCGG TACCCACTGG TTCCAAGAAA CCAATCCCTT CTTGCTGTTT
CAAGATTGCA GTAAATATGT GTATGTAGCC AATACCCCAA AACAGTTCAC CACAATGATG
CAACGCGCCA TACAAACGGC TATCAACGAG AAAGGCGTGG CGGTGTTGGG ACTCCCAGGT
GATGTAGCAG GTGCCGACCT CGAAGAAGTG CCTACTGCTA CACAAACCTT CTTAGCAAAA
CCCGTAGTAC GTCCTTCTGA TAGTGAACTC GACAAATTAT CAGCCGTACT AAACGACGCT
AAAAACAAGA AAATAGCCCT TTACTGCGGT CACGGTTGTC AGTATGCGGT GAAAGAAGTG
GAACAGCTTG CCGAAACCCT TAAAGCACCT ATCGTCGCTT CTTTCCGTGG CAAAATATTC
TTCGACCGCA CCGATAGCCC TTATATAGCG GGAATGAACG GCTTGCTCGG GCATCGTTCA
GGTTATGATG CTTGCGCCAA AGCCGATGTG CTCGTAATGC TCGGCACCGA TTTTCCTTAT
GCGGAGTTCT TACCTAAGAA AAACACCATT ATCCAAATAG ATGAACGCCC CGATATCATT
GGTCGTCGTG CCAAAGTAGA TTACGGTTTT GCAGGCGATG TGAAGGACAC CATTACCGCC
TTATTACCTA AACTCACCCC TCGCACCGAC GATAGTTTCC TCAAAGACAT TCACAAAGAG
TATTTGGATC TTGAAAAATC ATTGGACGAT TACACCAAAA AGAAAACCGA AGAGAACCAA
ATAGACCCCG AATATGCAGC TAAACTTTTG GATAAATACG CCGCCAACGA TGCTATTTTC
ACCGTCGATA CAGGTATGAA TGTAGTGTGG GCAGCGCGCT TTATCAAAGG TACAGGCAAA
CGTTACCTGA CTGGTTCGTT CAACCACGGT TCTATGGCAA ACGCCCTCCC AATGGCAATT
GGGGCAGCAG CCTCCTCCAA AGGTAGACAA GTGGTAGCAA TGTGTGGCGA TGGCGGTCTA
TCAATGCTCT TGGGCGACTT GGCTACCCTG ATGCAATACC AATACCCTGT GAAAATATTT
GTGTTCAACA ACCGTTCGCT CGCAATGGTA AAACTCGAAA TGGAAGTATC GGGCTACCTC
GATTGGCAAA CCAATATGGT AAACCCTCCT TTCGACAAAC TTGCCGACCT GATGAACATC
AAAGGCTATG AAGTGCGTAA AACCGAAGAC CTCGAAGCCA CCGTAAAAGC AGCTTTCGAG
CACGACGGAC CTACTTTGGT GAATATCTAC ACCAATCGCG ATACCTTAGC GATGCCTCCT
CATATCACTT TTGAACAGAT GAAAGGTTTT GCGACCAACA TCATCAAGAA GATAGGTCAA
GGTGACTTTG CAGAAGCCAA AGGCAGTATT ACCAACAGTA TGAAACACAT TAAGGACGTT
TTTTAG
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| Protein sequence | MSKNVSDQLV EMLVQAGVKR VYAITGDSLN PVNDAIRRDG RLEWIHVRHE ESAAYAASMD
AELNGIGCCM GSSGPGHVHL INGLYDANRS GNPVIAIAST CATHKFGTHW FQETNPFLLF
QDCSKYVYVA NTPKQFTTMM QRAIQTAINE KGVAVLGLPG DVAGADLEEV PTATQTFLAK
PVVRPSDSEL DKLSAVLNDA KNKKIALYCG HGCQYAVKEV EQLAETLKAP IVASFRGKIF
FDRTDSPYIA GMNGLLGHRS GYDACAKADV LVMLGTDFPY AEFLPKKNTI IQIDERPDII
GRRAKVDYGF AGDVKDTITA LLPKLTPRTD DSFLKDIHKE YLDLEKSLDD YTKKKTEENQ
IDPEYAAKLL DKYAANDAIF TVDTGMNVVW AARFIKGTGK RYLTGSFNHG SMANALPMAI
GAAASSKGRQ VVAMCGDGGL SMLLGDLATL MQYQYPVKIF VFNNRSLAMV KLEMEVSGYL
DWQTNMVNPP FDKLADLMNI KGYEVRKTED LEATVKAAFE HDGPTLVNIY TNRDTLAMPP
HITFEQMKGF ATNIIKKIGQ GDFAEAKGSI TNSMKHIKDV F
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