| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0931 |
|---|
| Symbol | |
|---|
| ID | 8367350 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 1082842 |
|---|
| End bp | 1084326 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644983356 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003141047 |
|---|
| Protein GI | 256819768 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00244516 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA TATTATACAT CACCCTATTA GCATTTCCGC TCTTCACGGC TTGCTCTAAA
TTCTTAGACA AGACCCCTTA CGAAGATTCA AGTGCTGAAA ACATAAGCGA TGCGGCATCG
GCAATTGCCC TTACCAATTC GGCTTATAAA CCTTTGCAAC GCTCTAACCT CTACAATATG
CGCCTCTGGA CGCTCGACAT CGTAGCAGGT AACAGCATCG TAGGCGCTGG AGGTGGTAAC
GACGGACTCG AGACTATCAC TCTTTCCAAC TTCAACGCAA CTGCCGATAA CCCTTTGGCG
CTCGAAATAT GGCGCGGTTG TAACCCTGGT ATTCTCTATT GCAATACGGC TCTAAAAGCT
TTGCCTTCTG CCAATATTCC TGAGGATATC AAAAACCGCT GTATCGGTGA AGCCAAATTC
CTCCGCGCGC ACTACTATTT CCTTTTGGTG CAACTCTTTG GCGATGTACC TCTTCAGCTC
GACCCTAAAG AGAGTTTGAC TAACAAAACG CCTTTCCGCC AAAGCAAAAT GAAGATATAC
AACGAGGTGA TTATCCTCGA CCTCAGAGAG GCTTTCAACC TATTGCCTAC ACGCGAGCAA
TATAGCAATG CCGATAAAGG TCGCGCCACC AAAGGTGCTG CTGCGGGTAT GCTCGCCAAA
GTATACCTCA CTTTGGGCAG ATATAGCGAA GCTCTTGAAA TGTGCAACGC TGTCGAAAAC
CTCGGTTATA CCCTCAATCC TGATTATTCC GATTGCTTTG GCGCTGCCGA ACGCAACAAA
AACACTGCCG AGTCTATCTT TGAAATTCAG TATTACGGAC TTACCAAAGA TGATTTTTGG
GGCGAAGAAA ACCAAGCCTC TTGGCTCAGT ACCTTTATGG GTCCTCGCAA CAGTGGTTGG
GTAGGCGGTG CTTATGGGTG GAATCAGCCT ACACAAGAGT TTGTAGACCA ATATGAGGCT
GGCGACCTCC GCAAGGATAA GACGATTCTC TATGAGGGTT GTCCTAATTT TGAGGGGAAT
GCGTACCGCG CTTCAATGTC TAACACGGGC TACAATGTGC GCAAGTTTTT AGTGCCTCTA
AGTCAGTCGC CCGATTTCAA TACCAACCCT GCCAACTTTG TAGCACTCCG CTTTGCCGAT
GTACTCTTAA TGAAAGCTGA AGCTCTCAAC GAATTGGGTC GCACTACGGA AGCTGAAGTG
CCTTTGTACA AAGTGCGCAC TCGTGCGGGT CTTACTCGTC GTGCCGATAT AGAGAACCTC
ACCCAAGCGC AAATGCGTGA GAAAATACGC CACGAACGCC GTATAGAACT CGCTTTTGAA
GGGCATCGTT GGTTTGATAT GATTCGCTGG GACAACGGTC AGTATGCACT CAATTTCTTA
CACTCTATAG GCAAAACCAA CGCCCGCGAG AAACACCTGC TCTTGCCTGT CCCTCAAAAA
GACATCGATG CCAACCCCAA CCTTACCCAA AACCCTGGTT GGTAG
|
|---|
| Protein sequence | MKKILYITLL AFPLFTACSK FLDKTPYEDS SAENISDAAS AIALTNSAYK PLQRSNLYNM
RLWTLDIVAG NSIVGAGGGN DGLETITLSN FNATADNPLA LEIWRGCNPG ILYCNTALKA
LPSANIPEDI KNRCIGEAKF LRAHYYFLLV QLFGDVPLQL DPKESLTNKT PFRQSKMKIY
NEVIILDLRE AFNLLPTREQ YSNADKGRAT KGAAAGMLAK VYLTLGRYSE ALEMCNAVEN
LGYTLNPDYS DCFGAAERNK NTAESIFEIQ YYGLTKDDFW GEENQASWLS TFMGPRNSGW
VGGAYGWNQP TQEFVDQYEA GDLRKDKTIL YEGCPNFEGN AYRASMSNTG YNVRKFLVPL
SQSPDFNTNP ANFVALRFAD VLLMKAEALN ELGRTTEAEV PLYKVRTRAG LTRRADIENL
TQAQMREKIR HERRIELAFE GHRWFDMIRW DNGQYALNFL HSIGKTNARE KHLLLPVPQK
DIDANPNLTQ NPGW
|
|---|
| |