| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0830 |
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| Symbol | |
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| ID | 8367249 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 991941 |
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| End bp | 994169 |
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| Gene Length | 2229 bp |
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| Protein Length | 742 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 644983256 |
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| Product | ribonuclease R |
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| Protein accession | YP_003140947 |
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| Protein GI | 256819668 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA CAAATAAAAC TCAAAAGCAA GGAAAATCAG GAAAACCTAA AAAGAATAAG
AGTTTAGCTA AACGCAACAA GCAAGAGCTT ATCAAAGCGA TTTTCTCGGT GTTACAAGAA
CACCCCGAAG AGAGCTTTAA CTACAAGCAA ATTGCTGCCA AACTCCACAT TACCGATGCA
CCACGTCGTG ATATGCTGGT GAAACAACTC GTACAACTGA AAGAGAAAAA ACGCATTGTA
GAAATCGACC GTGGGAAGTA TCAAGCTATC CCTATGCAAC ACTATTATGT AGGTACGCTT
GATGTGAGTG CGCGCGGTAA TGGTTATGTA ATAGTTGATG GTTTAGACAA CGACATTTTT
GTAGCACAGA ATTTTCTAAA TAAAGCTCTC CACGGCGATT TGGTGGAAGT GTATGTATTT
CCACGTTTTA GAAATCGCAA TAAGATGGAA GGAGAAATTA GTAAGGTATT AGAACGCAAC
AAAGTGCGCT TTGTAGGTAC TGTGCAAATG CACAAAAACT TTGCTTTTGT TGTCCCTACC
GATGCCCGTA TGTATACTGA TTTCTTTGTG TTAAAAGATA AACTCAATGG TGCTCAGGAC
GGCGACCGTG TGATTGTACG CATAGAAGAT TGGAAAGACA AAAGTGATTC GCCTATGGGG
GTAGTGGAGC AGATACTCGG TAAACCAGGT GAACAAACTA CCGAAATGCA CTCTATCTTA
GCCGAATATG GTCTGCCGTA CACCTATCCA GAAGAGGTAG AAGCCTTTGC TAAAAAGTTA
GACCTTTCTA TTACTGATGA GGAGATTGCC CGTCGTCGTG ATATGCGTGA AAACCTCACT
TTCACTATCG ACCCTCGTGA TGCAAAAGAC TTTGACGATG CACTGTCGTT CAAACTTTTG
GAGAATGGCA ATTACGAGAT AGGAGTACAT ATCGCCGATG TATCGCACTA CGTAAAAGAA
GGTACTATAT TAGATGAAGA GGCTTACAAT CGTGCTACTT CTGTGTATTT GGTAGATAGG
GTAGTGCCAA TGTTACCCGA AGTGCTCTGT AACTTCGCTT GTTCACTCCG TCCTGATGAA
GATAAATACA CCTTTTCGGC AGTGTTTGAG ATGAATAAGA AGGCTGAAGT GGTAGATATT
TGGATAGGAC GCACCGTAAC ACACTCGTCA TTTAGGTTTG CTTACGAAGA AGCACAATCA
GTAATAGAGC AAGCCAAAGT AGGGGAGGGG TACACCATTC CTGCTGAAAC TTCCATTACC
GATAAAGAGC GTGCAATACC TGCTGAGGTA GTAGAGGCTA TTCTCACACT CAATACCTTA
GCCGAAAAAC TTCGCCGTAA GCGTATGCGT TTGGGAGCTA TTACTTTTGA TAAAGTAGAA
GTGAAATTCG ACCTCGATGA GAATGGCAAC CCTACAGGCG TATATTTCAA AGAAAGCAAG
GAAGCCAACA AACTGATTGA AGAGTTTATG CTCTTGGCTA ACAGAAAGGT AGCTGAGTAT
GTAGCCAAAA TGAAAAAGAC ATTCGTATAC CGCGTACACG ATGAACCCGA TGCCGATAAA
CTGCAACAGT TCAATGCGGT AATTAGTAGA TTTGGTTATA GCTTGAACTT GAACAACCGT
CAAACCACTA CCGATTCACT TAATAATCTC TTAGAAGAAG TAAAAGGCAA AAAAGAACAA
AACTTAGTCG ATACTTTGGC AATACGTTCA ATGGCAAAAG CTACTTATAC TACTAAAAAC
ATAGGACACT ATGGTTTGGC GTTTGAGTAT TATACCCATT TCACTTCGCC TATACGCCGT
TATCCCGATG TGATGGTACA CCGTCTTTTG CAACTCTATT TAGATAACGC CCCTTCACAA
CCCGAAGCTG AATATGAAAC CAAATGCAAA CACTCGTCAC AAATGGAGAG TTTAGCAGCC
TCAGCTGAGC GTGATTCTAT CAAATATATG CAGGTGAAAT ATATGGAAGC CCATAAAAAT
CAGCAGTTTG CAGGAGTGAT TTCGGGTGTA ACCGAATGGG GTATTTATGT AGAAATTACG
GTCAACAAAT GCGAAGGATT GGTACGCGCT CGTGATATCA AAGATGATTA TTACACTTTC
GACGAACAAC AATACGCCTT GGTAGGACAA GCCACTGGCA AAACCTATCA GCTTGGCGAC
GAAGTAATGA TACGTGTGAA AAACACCGAC CTGATGAAAA AGCAATTAGA TTTTGAACTG
ATTGATTAG
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| Protein sequence | MKKTNKTQKQ GKSGKPKKNK SLAKRNKQEL IKAIFSVLQE HPEESFNYKQ IAAKLHITDA
PRRDMLVKQL VQLKEKKRIV EIDRGKYQAI PMQHYYVGTL DVSARGNGYV IVDGLDNDIF
VAQNFLNKAL HGDLVEVYVF PRFRNRNKME GEISKVLERN KVRFVGTVQM HKNFAFVVPT
DARMYTDFFV LKDKLNGAQD GDRVIVRIED WKDKSDSPMG VVEQILGKPG EQTTEMHSIL
AEYGLPYTYP EEVEAFAKKL DLSITDEEIA RRRDMRENLT FTIDPRDAKD FDDALSFKLL
ENGNYEIGVH IADVSHYVKE GTILDEEAYN RATSVYLVDR VVPMLPEVLC NFACSLRPDE
DKYTFSAVFE MNKKAEVVDI WIGRTVTHSS FRFAYEEAQS VIEQAKVGEG YTIPAETSIT
DKERAIPAEV VEAILTLNTL AEKLRRKRMR LGAITFDKVE VKFDLDENGN PTGVYFKESK
EANKLIEEFM LLANRKVAEY VAKMKKTFVY RVHDEPDADK LQQFNAVISR FGYSLNLNNR
QTTTDSLNNL LEEVKGKKEQ NLVDTLAIRS MAKATYTTKN IGHYGLAFEY YTHFTSPIRR
YPDVMVHRLL QLYLDNAPSQ PEAEYETKCK HSSQMESLAA SAERDSIKYM QVKYMEAHKN
QQFAGVISGV TEWGIYVEIT VNKCEGLVRA RDIKDDYYTF DEQQYALVGQ ATGKTYQLGD
EVMIRVKNTD LMKKQLDFEL ID
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