| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0788 |
|---|
| Symbol | |
|---|
| ID | 8367206 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 950655 |
|---|
| End bp | 952223 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644983215 |
|---|
| Product | phosphodiesterase |
|---|
| Protein accession | YP_003140906 |
|---|
| Protein GI | 256819627 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1418] Predicted HD superfamily hydrolase |
|---|
| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG
[TIGR03319] conserved hypothetical protein YmdA/YtgF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAGTA CAGTTATTAT AAGTATTGCA GTTTTTATCA TTGCCCTTTT CATAGGGTTC
GCTATCGCCA AATCGCTGGA AAAGAAGAAC GCCTCTAAAA TCATTCTCAA CGCTAAGAAT
GAAGCCGACG TTCTTCTGAA AAACGCTAAA GCCGAAGCTG AAAATATCAA AAAAGACAAG
ATATTCCAAG CAAAAGAGAA GTTCCTTGAA CTAAAAGCTG AACACGAAAA AACAATCACT
GCCAAAGATA AAAAAATGGC AGAGGCTGAG AAGCGTATAC GCGATAAAGA GTCACAAGTG
TCCAATGAAT TGGCACAAAA TAAGCGCCTA AAAGATGAGT TGGAAAAGAA AACAGAAGAA
GCCGACTTTC GCTTGCAGAC ACTCGATAAA AAACAAGAAG AAATAGACCG CCTACACAAA
AGTCAGGTAC AACAATTAGA GGTTATTTCA GGCTTGTCTG CCGAAGAAGC TAAGAAACTA
CTCACCGATT CATTGCGCAG TGAAGCCCAA GCCGACGCGA TGGCTTATAT CCAAAATACC
ATTGAAGAAG CCAAGCTCAC TGCTCACCAA GAAGCCCGCA AAATCATCAT TAATACCATT
CAGCGTATAG GCACTGAGGA AGCAGTAGAC AATTGCGTAT CGGTATTCAA TCTCGAGTCT
GACGAGGTGA AAGGTCGTAT CATCGGTCGT GAAGGGCGCA ATATCCGTGC CCTCGAAGCA
GCTACTGGGG TCGAAATCAT TGTAGACGAT ACCCCCGAAG CGATTATTCT CTCTTGCTTC
GACTCGGTAC GTCGCGAAAT CGCACGCCTT TCTTTGCACA AGCTCGTAAC CGACGGGCGT
ATTCACCCTG CACGCATTGA AGAAGTGGTT GAAAAAACTA CCAAACAAAT AGAAGAAGAA
ATCGTTGAAA TAGGTAAACG CACCGTAATT GACCTCGGTA TCCACGGATT GCACCCCGAG
TTAGTAAAAT GTGTAGGACG TATGAAATAC CGTTCGTCAT ATGGGCAGAA CCTCTTGCAA
CACTCTCGCG AAGTAGCCAA GCTCTGCGGA GTAATGGCAG CTGAGTTAGG CTTGAACCCT
AAACTTGCCA AACGTGCCGG ACTTTTACAC GACATCGGTA AAGTACCGCA GATAGAAAGT
GAGACTCCTC ACGCTCTCCT CGGTATGGAA TGGGCAGAGA AATACGGCGA AAAACCCGAA
GTGTGCAATG CTATCGGGGC ACACCACGAC GAGATTGAGA TGACCTCCTT GCTTTCGCCT
ATCGTACAAG TATGCGATGC TATTAGTGGA GCTCGTCCAG GAGCACGTCG TCAAGTACTC
GATTCGTATA TACAACGTCT CAAAGACCTC GAAGATGCTG CTTTCACTTT CCAAGGCGTG
AAGAAAGCCT ATGCAATCCA AGCAGGTCGT GAGTTACGTG TAATCGTAGA AAGCGAAAGA
GTAACCGACG ATAAAGCCGC AGAACTTTCA TTCAACTTAT CGCAAAAAAT CCAAACCGAT
ATGACCTACC CAGGTCAAGT GAAAGTAACG GTAATACGTG AAACTCGTGC TGTGAATATC
GCGAAGTAA
|
|---|
| Protein sequence | MDSTVIISIA VFIIALFIGF AIAKSLEKKN ASKIILNAKN EADVLLKNAK AEAENIKKDK
IFQAKEKFLE LKAEHEKTIT AKDKKMAEAE KRIRDKESQV SNELAQNKRL KDELEKKTEE
ADFRLQTLDK KQEEIDRLHK SQVQQLEVIS GLSAEEAKKL LTDSLRSEAQ ADAMAYIQNT
IEEAKLTAHQ EARKIIINTI QRIGTEEAVD NCVSVFNLES DEVKGRIIGR EGRNIRALEA
ATGVEIIVDD TPEAIILSCF DSVRREIARL SLHKLVTDGR IHPARIEEVV EKTTKQIEEE
IVEIGKRTVI DLGIHGLHPE LVKCVGRMKY RSSYGQNLLQ HSREVAKLCG VMAAELGLNP
KLAKRAGLLH DIGKVPQIES ETPHALLGME WAEKYGEKPE VCNAIGAHHD EIEMTSLLSP
IVQVCDAISG ARPGARRQVL DSYIQRLKDL EDAAFTFQGV KKAYAIQAGR ELRVIVESER
VTDDKAAELS FNLSQKIQTD MTYPGQVKVT VIRETRAVNI AK
|
|---|
| |