Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_0604 |
Symbol | |
ID | 8367021 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | - |
Start bp | 756428 |
End bp | 757408 |
Gene Length | 981 bp |
Protein Length | 326 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644983031 |
Product | secretion protein HlyD family protein |
Protein accession | YP_003140723 |
Protein GI | 256819444 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAGA AAAACATCAC CGGTCTTATT GTAACAATCA CTGTATTTGC AGTAGTTCTT ATTCTTTCTA TCTACTTTTT TAGTAACCGC GAACCTGTAT ATTTGCAAGG ACAAGTAGAA GCCAAACAAA TCAACGTTGC CCCCAAAGTA CCTGGTAGGG TGAAAGCTAT CTACAAGCAG GAAGGCGACC AAGTGCACAA AGGCGACCTC CTTTTAGAAC TCGAAAGCAC TGAACTCGAT GCCAAACTCT CTCAAGCCGA AGCGGCACGT TTGGCAGCAC AAGCTCAATC CGATAAAGCA CAACGCGGTG CCCGCAGCGA ACAAATTCAA GGGGCTTACA ATGTATGGCA ACAAGCCGAA GCGGCTGCCC AGCTCGCTGA AAAAACCTAT CAGCGTGTGA GCAACCTTTA TAACGATAAG GTATTGCCTG CTCAAAAGAA AGATGAGGCT TATACCCAAA TGGTTGCCTT ACAAAAACAA GCGGAAGCAG CCAAATCACA ATACGAAATG GCGAAAAACG GAGCTCGTGT AGAGGATAAA ACCGCTGCCC GAGCCCTTGT AGCCCAAGCG CAAGGGGTCA TTACTGAGGT AAATGCCTAT AAAGATGGTG CTAAAGTGTT TGCCCCTGCC GATGCCGAGA TACAAACCAT TATCCCCAAC GAAGGCGAAA TCGTGAATGC GGGTTACCCT GTGATGAACC TCATCGATAC CCAAGACGAG TGGGTGGTGT TCAACATACG CGAAGATAAA ATGGCAGACT TCAAGATAGG CACTAAATTC AAAGGCATCG TACCCGCCCT TGGCAATCAG GAGATAGAGT TGGAAGTAAA ACACATAGCC GTACAAGCTG ATTTCGCCAC TTGGACAGCT ACCAAGAGCA AAGGCGACTT CGACAAGAAA ACTTTCGCTA TCAAAGCCTA CCCTACCCAA AAAGTAAAGG ATTTAAGACC CGGAATGTCA GTATTAGTAA GTGAAAAATG A
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Protein sequence | MKKKNITGLI VTITVFAVVL ILSIYFFSNR EPVYLQGQVE AKQINVAPKV PGRVKAIYKQ EGDQVHKGDL LLELESTELD AKLSQAEAAR LAAQAQSDKA QRGARSEQIQ GAYNVWQQAE AAAQLAEKTY QRVSNLYNDK VLPAQKKDEA YTQMVALQKQ AEAAKSQYEM AKNGARVEDK TAARALVAQA QGVITEVNAY KDGAKVFAPA DAEIQTIIPN EGEIVNAGYP VMNLIDTQDE WVVFNIREDK MADFKIGTKF KGIVPALGNQ EIELEVKHIA VQADFATWTA TKSKGDFDKK TFAIKAYPTQ KVKDLRPGMS VLVSEK
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