Gene Coch_0560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_0560 
Symbol 
ID8366972 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp702236 
End bp703027 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content40% 
IMG OID644982982 
Productglycoside hydrolase family 16 
Protein accessionYP_003140679 
Protein GI256819400 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2273] Beta-glucanase/Beta-glucan synthetase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATATGA AACCTTTTAC ATTATTACTA TTTACGTTGG CTCTTATGAG CTGGGGTTGT 
TCAAAGAAAG AGGAGGTTAA TGAGAAACCT TGGAAATTGG TATGGGAAGA TAATTTCGAC
AGAAATGATA TTTTCTCGAC AGGAGTGTGG ACAAAAATGA ACCGTTGGGG AGACAACTGT
TGCAACACAA TGAGCAAAGA CCCGAGTTTG TTTGAGATAA AGGACGGTAA GATGATTCTT
TTAGGGGTGA CTAATAAAGA TTTAAAAAAA GACCCTTCGC CTTACCTTAC TGCGGGTGTT
TGGACTAAAG AAAAGAAGTT TTTCCAAAAA GGGAAGATAG AAGTACGCTG TAAGTTAGAA
GGCACGCAAG GAGCGTGGCC TGCTATATGG TTGGTTACCA AAGATACTAA ATGGCCTGAA
GAAGGAGGAG AGATAGACCT TATAGAACGC TTAAATTACG ACCCTTTTGT GTATCACACT
GTGCATTCGC CGTTTACACA TAAAAAGAAA GCAGGACCAA AAAACTCTAC TTCTTTCCCT
ATTAATCCAG ATGACTACAA CACTTACGCA GTGGATTTTG AAGGAGATGT GATACGGTTT
TACGTAAACG GACTGCCTTC ATTTGTCTAC TCGCGTATGC CTGGTAAGGA GAGTGAAAAG
CAATTCCCGT TTGATTTGCC TTTCTTTTTG ATTATTGATA TGCAACTGGG AGGTGAATGG
GTAGGCGAAG TAAAGCCGTT TGATAAACCC GTGAGAATGT ATATTGATTG GGTGCGGTTT
TATCAGAGGT AA
 
Protein sequence
MNMKPFTLLL FTLALMSWGC SKKEEVNEKP WKLVWEDNFD RNDIFSTGVW TKMNRWGDNC 
CNTMSKDPSL FEIKDGKMIL LGVTNKDLKK DPSPYLTAGV WTKEKKFFQK GKIEVRCKLE
GTQGAWPAIW LVTKDTKWPE EGGEIDLIER LNYDPFVYHT VHSPFTHKKK AGPKNSTSFP
INPDDYNTYA VDFEGDVIRF YVNGLPSFVY SRMPGKESEK QFPFDLPFFL IIDMQLGGEW
VGEVKPFDKP VRMYIDWVRF YQR