Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_0560 |
Symbol | |
ID | 8366972 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | - |
Start bp | 702236 |
End bp | 703027 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 644982982 |
Product | glycoside hydrolase family 16 |
Protein accession | YP_003140679 |
Protein GI | 256819400 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2273] Beta-glucanase/Beta-glucan synthetase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATATGA AACCTTTTAC ATTATTACTA TTTACGTTGG CTCTTATGAG CTGGGGTTGT TCAAAGAAAG AGGAGGTTAA TGAGAAACCT TGGAAATTGG TATGGGAAGA TAATTTCGAC AGAAATGATA TTTTCTCGAC AGGAGTGTGG ACAAAAATGA ACCGTTGGGG AGACAACTGT TGCAACACAA TGAGCAAAGA CCCGAGTTTG TTTGAGATAA AGGACGGTAA GATGATTCTT TTAGGGGTGA CTAATAAAGA TTTAAAAAAA GACCCTTCGC CTTACCTTAC TGCGGGTGTT TGGACTAAAG AAAAGAAGTT TTTCCAAAAA GGGAAGATAG AAGTACGCTG TAAGTTAGAA GGCACGCAAG GAGCGTGGCC TGCTATATGG TTGGTTACCA AAGATACTAA ATGGCCTGAA GAAGGAGGAG AGATAGACCT TATAGAACGC TTAAATTACG ACCCTTTTGT GTATCACACT GTGCATTCGC CGTTTACACA TAAAAAGAAA GCAGGACCAA AAAACTCTAC TTCTTTCCCT ATTAATCCAG ATGACTACAA CACTTACGCA GTGGATTTTG AAGGAGATGT GATACGGTTT TACGTAAACG GACTGCCTTC ATTTGTCTAC TCGCGTATGC CTGGTAAGGA GAGTGAAAAG CAATTCCCGT TTGATTTGCC TTTCTTTTTG ATTATTGATA TGCAACTGGG AGGTGAATGG GTAGGCGAAG TAAAGCCGTT TGATAAACCC GTGAGAATGT ATATTGATTG GGTGCGGTTT TATCAGAGGT AA
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Protein sequence | MNMKPFTLLL FTLALMSWGC SKKEEVNEKP WKLVWEDNFD RNDIFSTGVW TKMNRWGDNC CNTMSKDPSL FEIKDGKMIL LGVTNKDLKK DPSPYLTAGV WTKEKKFFQK GKIEVRCKLE GTQGAWPAIW LVTKDTKWPE EGGEIDLIER LNYDPFVYHT VHSPFTHKKK AGPKNSTSFP INPDDYNTYA VDFEGDVIRF YVNGLPSFVY SRMPGKESEK QFPFDLPFFL IIDMQLGGEW VGEVKPFDKP VRMYIDWVRF YQR
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