Gene Coch_0549 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_0549 
Symbol 
ID8366961 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp685966 
End bp686865 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content41% 
IMG OID644982971 
Productlipid A biosynthesis acyltransferase 
Protein accessionYP_003140668 
Protein GI256819389 
COG category[R] General function prediction only 
COG ID[COG4261] Predicted acyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.3206 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACGCTA ACGAACAAGC CAAAACGAAA TGGCAAGGCA AGTCTAAGGG TACCGTATTA 
GGCTATAGTA TCTTTGTGTG GCTGATGAAA CACTTGGGTA TTTATGCTGC TTATGCTTTG
CTCATCTTTG TAGCGTTCTA CTACTTTTTG TTTGAGCGGC GCTCCAATGG CTATATGTAT
TACTATTTCC GTCACCGCTT GGGCTATTCG CCTCTGAGAG CGGTAGTGAA CTTGTACTTA
AATTATTTTA CTTTCGGGCA AACTATTATT GATAAGATTG CTATCTTGGC AGGCTTGGAA
GAGAAATTTA CTTATGAGTT TGATGGAGTA GAAAGCTTAC ATAAACTATT AGACGAACAA
CAGAGCGGAA TACTTATTTC CGCACACATA GGCAACTTTG AAATTGCTGA ACCTTTTTTC
AGGAAAATAG ATATTGATTT GAAGATAAGC ACCGTAACTA CCGATATGGA ACACTCGGTA
ATCAAGGAGT ATTTGGAGTC GATTTCTAAA AATAAACCCT CGAATCAGTT TATCTATGTG
AAAGAAGATA TGTCGCATAT CTTCAAAATC AACGATGCTA TTGGCGACAA CAAAATAGTG
TGTTTCACGG GAGACCGATA TTTTGAGGGC GTGCGTTCGC TCAAAGGAAC GCTGTTGGGC
GCAGAAGCTA CCTTCCCCGC AGGTCCTTTC TTTATAGCCT CGCGCTTGAA AGTGCCGGTG
CTTTTCGTTT ATGTGATGAA GGAAAGTAGA TTGCATTACC ACTTGTATGC CCAAGTAGCT
GAAGTGAAAA GTCGCGATGC CCAAGCGCTA CTCGACGCTT ATACCGAGAA TATGGAGCAA
ATGCTACGAA AGTATCCGCT ACAATGGTTT AATTATTTCA ACTTTTGGGA TGAACAATGA
 
Protein sequence
MHANEQAKTK WQGKSKGTVL GYSIFVWLMK HLGIYAAYAL LIFVAFYYFL FERRSNGYMY 
YYFRHRLGYS PLRAVVNLYL NYFTFGQTII DKIAILAGLE EKFTYEFDGV ESLHKLLDEQ
QSGILISAHI GNFEIAEPFF RKIDIDLKIS TVTTDMEHSV IKEYLESISK NKPSNQFIYV
KEDMSHIFKI NDAIGDNKIV CFTGDRYFEG VRSLKGTLLG AEATFPAGPF FIASRLKVPV
LFVYVMKESR LHYHLYAQVA EVKSRDAQAL LDAYTENMEQ MLRKYPLQWF NYFNFWDEQ