| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0515 |
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| Symbol | |
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| ID | 8366927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | - |
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| Start bp | 651852 |
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| End bp | 652847 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644982939 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_003140636 |
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| Protein GI | 256819357 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAACCT CAGAATTAAC TATTGATGAG TGGTATATGC GTAGGTGCAT TCAGTTGGCT
TATAATGGCT TAGGAAGTAC CTATCCGAAC CCTATGGTAG GTAGTGTTAT CGTATACGAA
GGGCGTATCA TAGGGGAGGG GTGGCACCAG AAAGCGGGTG AGGCACACGC TGAGGTACGG
GCGATTACCT CGGTGAAGGA TAAGAGTCTG CTACCGAAAA GTACAATTTA CGTGAGTTTA
GAGCCCTGTT GCCATTTTGG GAAAACGCCT CCGTGTGCTG ACCTTATCAT TGCTCACAAG
ATAGGGCGGG TAGTGATTGG TACTACCGAC CCTTTTGCGA AAGTGCACGG CAAAGGGATT
GAAAAACTGC GCAATGCAGG GTGTGAGGTG ATAGTGGGGG TGTGTGAGGC TGAATGTAGG
GAACTGAACA AGCGGTTTTT TACTTTTCAC GAAAAACATC GCCCTTATAT TATCCTAAAA
TGGGCTGAAA CGCGCGATGG GTTTATAGCT CCCCTGCATA AAGAAGAGGT TGCTCCGCAC
TGGATTAGCG ACGTTTATGC ACGCCAGACA GCACACCAAA TGCGCACTGA GGAACAGGGT
ATTGTGGTGG GAGTAGGAAC GGTATTGGCG GATAATCCTT CGTTGGACAG CCGTAGCTGG
TATGGGCGCA ACCCTGTGAG GATAATAATT GACCCGAAGT TACGTAGTCC GAAGGAATTT
GCGGTATGGA ACGACCGTAC AACTACTTTG TTTTTTACTG AAGAGACGTC TGTTCCGGAG
ATGATACACA CTGATTTTTT CACGATAGAT TTTAAGCATA AACCTTTGGA ACAAATTTGT
GCTAAACTGT ATGAAATGAA TTTACAAAGT ATGATTGTGG AAGGAGGGGC TTATACATTA
CAACAGTTTA TCGACGAAGG TTTATGGGAC GAAGCGGTTG TATTTACGGG GGATATTTGC
TTTGGAGAAG GGGTGAAAGC GCCTATTCTT AAGTAA
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| Protein sequence | MTTSELTIDE WYMRRCIQLA YNGLGSTYPN PMVGSVIVYE GRIIGEGWHQ KAGEAHAEVR
AITSVKDKSL LPKSTIYVSL EPCCHFGKTP PCADLIIAHK IGRVVIGTTD PFAKVHGKGI
EKLRNAGCEV IVGVCEAECR ELNKRFFTFH EKHRPYIILK WAETRDGFIA PLHKEEVAPH
WISDVYARQT AHQMRTEEQG IVVGVGTVLA DNPSLDSRSW YGRNPVRIII DPKLRSPKEF
AVWNDRTTTL FFTEETSVPE MIHTDFFTID FKHKPLEQIC AKLYEMNLQS MIVEGGAYTL
QQFIDEGLWD EAVVFTGDIC FGEGVKAPIL K
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