| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0482 |
|---|
| Symbol | |
|---|
| ID | 8366893 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 618985 |
|---|
| End bp | 620313 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644982908 |
|---|
| Product | peptidase M50 |
|---|
| Protein accession | YP_003140606 |
|---|
| Protein GI | 256819327 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
|---|
| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0205055 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGTAT TTTTAATAAA AGCGGCTCAG CTGATTCTGA GTCTTTCAAT TTTAGTAGTC
CTACACGAGT TAGGACATTT TATACCTGCT AAACTCTTTA AAACAAGAGT AGAAAAGTTT
TTTCTTTTCT TCGATGTGAA GTTTGCCCTT TTTAAGAAGA AGATAGGCGA AACAGTATAC
GGCATCGGGT GGCTACCGTT GGGTGGCTAC GTGAAGATTG CCGGTATGAT TGATGAGAGT
ATGGACAAGG AGCAAATGGC GCAACCTCCA CAGCCGTGGG AGTTCCGTTC TAAACCTGCG
TGGCAACGCC TTATCATTAT GGTAGGTGGT GTAACGGTAA ACCTGCTCTT AGGTTTCATT
ATTTACGCGA TGATACTCTT CACTTGGGGG CAAGACCAGC TCAAACCCGA AGGTATTAAG
GAAGGTTTTG CAGTAACCCG CACAATGCGC GCTTATGGGT TCCAGAACGG CGATATTGTA
ACCGCTATTA ATGGCAAACC CTTAGAAAGC GTAGCCGATG TAAGTAAATA TATCTTGTTG
CGCAATACCA GTGAGCTTAC CGTAAAAGGA CAAGACGGAA CTGTGCGTAC TCTATCTCTC
CCCGATTCTA TTGGGAAGAT GCTCTATTTA CGAGGAGAAA CGACTCCTTT TAGTGTAAAA
GTAAAACCCA TTATCGATAC AGTAATAGTG GGAATGCCTG CTCAGAAAGC AGGTTTACAA
AAGGGCGATA AGCTGTTAAG CATCAATGGA GAACCTATTT ACTATTTCTC CGATGTAACT
CCTGCCCTTG CAATGGCTCC TGAGAACACT CCTCTCACTT TTGCTATTGA GCGCAACGGA
AAGCCAATGA CCCTCAGCGT CCTTCCCGAC AGTAATAAAA AAATAGGTAT CAGTGGTATG
CAAACCGAAG GTGAGGTACA ATTTACCCAT AAGACTTACA GTTTAGGAGA AGCCCTCAGT
CACGGAATTG CATACGGTTA CAATGTGCTA CACGACTATG TAGCCCAGTT TAAATTTATC
TTTACCAAGA AGGGAGCCAG TGAAGTAGGA GGCTTTGGTT CTATAGGAAA GCTCTTCCCA
TCGTCTTGGA ATTGGCTCGC TTTTTGGCAT ATCACTGCTT TTCTATCTAT TGCCTTAGCC
TTTATGAATA TTTTGCCTAT CCCAGCCTTA GACGGCGGAC ACGTGGTATT CCTCCTATAC
GAAATGGTAA CGGGTAGAAA ACCGAGTGAA AAAGTATTAG AACACGCCCA AATGGTAGGT
TTTGCTATTT TAATAGCCCT TTTGCTATAT GCCAATGGTA GCGACCTGTA TAGAGCGATT
TTCAAGTAA
|
|---|
| Protein sequence | MEVFLIKAAQ LILSLSILVV LHELGHFIPA KLFKTRVEKF FLFFDVKFAL FKKKIGETVY
GIGWLPLGGY VKIAGMIDES MDKEQMAQPP QPWEFRSKPA WQRLIIMVGG VTVNLLLGFI
IYAMILFTWG QDQLKPEGIK EGFAVTRTMR AYGFQNGDIV TAINGKPLES VADVSKYILL
RNTSELTVKG QDGTVRTLSL PDSIGKMLYL RGETTPFSVK VKPIIDTVIV GMPAQKAGLQ
KGDKLLSING EPIYYFSDVT PALAMAPENT PLTFAIERNG KPMTLSVLPD SNKKIGISGM
QTEGEVQFTH KTYSLGEALS HGIAYGYNVL HDYVAQFKFI FTKKGASEVG GFGSIGKLFP
SSWNWLAFWH ITAFLSIALA FMNILPIPAL DGGHVVFLLY EMVTGRKPSE KVLEHAQMVG
FAILIALLLY ANGSDLYRAI FK
|
|---|
| |