Gene Coch_0417 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_0417 
Symbol 
ID8366823 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand- 
Start bp526152 
End bp526793 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content46% 
IMG OID644982838 
Productpyridoxamine 5'-phosphate oxidase 
Protein accessionYP_003140541 
Protein GI256819262 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0259] Pyridoxamine-phosphate oxidase 
TIGRFAM ID[TIGR00558] pyridoxamine-phosphate oxidase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATTTAA GCAACTACCG AAAAACCTAC GACAAGCGTG CTCTTTTAGA AAGCGATGCC 
CCTGAGAATC CTATGCAGCT CTTTCAAACT TGGTTCTATG AAGCCGATGA GAGCAACAGT 
GTAGACGAAG CCAATGCGAT GTCAGTAAGT ACCATAGGAC TCGATGGTTA CCCAAAGACC 
CGCGTAGTAC TCCTTAAACA GTACACTTAC GAAGGCTTTA TTTTCTACAC CAATTACAAC 
AGCGAAAAAG GGAAAGCCAT TCTCGCCAAT CCTCACTTGT GTTTATCTTT CTTCTGGCCA 
TCTCTCGAAA GGCAAATCAT CATCAAAGGT ATTGCTGAAA AAGTCCCTGC CAATACCTCC 
GACGGTTATT TTGAGTCACG CCCTTTGGGC AGTCAGTTAG GGGCAATAGT ATCACCACAA 
AGCGAAGTAA TCCCTTCAAG AGAATACCTC GAAGAGCACC TGCACGCATT AGAAAAACAA 
TACGAAGGCA AAGAAGTACC TCGTCCTGAG CATTGGGGAG GTTTCTTAGT CCGACCACAA 
AGCCTTGAAT TTTGGCAAGG ACGCCCTAAT CGTCTACACG ACCGCCTGCG TTACACCCTT 
ACCGAAGACT ACGATTGGAA ATTAGAGCGA TTAGCACCGT GA
 
Protein sequence
MDLSNYRKTY DKRALLESDA PENPMQLFQT WFYEADESNS VDEANAMSVS TIGLDGYPKT 
RVVLLKQYTY EGFIFYTNYN SEKGKAILAN PHLCLSFFWP SLERQIIIKG IAEKVPANTS 
DGYFESRPLG SQLGAIVSPQ SEVIPSREYL EEHLHALEKQ YEGKEVPRPE HWGGFLVRPQ 
SLEFWQGRPN RLHDRLRYTL TEDYDWKLER LAP