Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_0381 |
Symbol | |
ID | 8366787 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | + |
Start bp | 485080 |
End bp | 485991 |
Gene Length | 912 bp |
Protein Length | 303 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 644982802 |
Product | tyrosine recombinase XerD |
Protein accession | YP_003140505 |
Protein GI | 256819226 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTGGCGTA AAGTAAATAC CGATTATCAG AATTATTTGC GATTACAACG TGGTTTATCG CAGAATACTG TTGTGTCTTA TGGCTTAGAT ATTGAGAAAC TCATAGGGTA TTTGGAAAAA TACAATATCA CTGAACCCCC CGATACTATT CAAGTAGATA CCTTGCGCCA GTTCGTATAC GAAGTTTCCA AAGAACTCAA CGCACGTTCA CAAGCCCGAC TCATATCGGC TTTAAAGAGT TTTTTTAAGT TTATGATTTC TGAGAAAGGA CGTGAAGACT TTCCTATGAG CCTTATCGAC AGCCCTAAAA TAGGCGTGAA ACTCCCCGAT ACACTTTCCT TAAAAGAAAT AGATGCTATG CTCGCCTCTA TAGACCTCAG CACCGATGAG GGGCATCGTA ATAAAGCTAT TATAGAAACG CTTTACGGTT GTGGATTGCG AGTGTCGGAA TTGGTCTCTC TCCGTCTATC CGACTTGTTT TTTGAAGAAG ATTTCATTAG AGTAATGGGG AAAGGTAGTA AACAGCGCTT AGTGCCTATT GAAAGCTATA CGCAGAAACA AATTAACAAT TATATCAATA ACCAGCGCAA ACAATTAAAG ATAGCAAAAG GTCACGAAGA TTACGTTTTC CTAAACAGAA GAGGGAAACA ACTTACTCGC GCAATGATAT TTACTATTGT AAGACAAGTA GCTGAAAACA TAGGATTACA GAAGACCATT AGCCCACATA CTTTCAGACA TTCTTTTGCA ACACACCTAT TGGAGAACGG TGCGAATCTG CGTGCCATAC AGATGATGTT AGGTCACGAG AATATTACTA CCACAGAAAT ATACGTACAC GTAGAGAAGT CATATTTGAG GGAAGCTTTG GTGAAATACC ACCCACGCCA TAAAATGAGC TTTACCCAAT AG
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Protein sequence | MWRKVNTDYQ NYLRLQRGLS QNTVVSYGLD IEKLIGYLEK YNITEPPDTI QVDTLRQFVY EVSKELNARS QARLISALKS FFKFMISEKG REDFPMSLID SPKIGVKLPD TLSLKEIDAM LASIDLSTDE GHRNKAIIET LYGCGLRVSE LVSLRLSDLF FEEDFIRVMG KGSKQRLVPI ESYTQKQINN YINNQRKQLK IAKGHEDYVF LNRRGKQLTR AMIFTIVRQV AENIGLQKTI SPHTFRHSFA THLLENGANL RAIQMMLGHE NITTTEIYVH VEKSYLREAL VKYHPRHKMS FTQ
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