Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_0362 |
Symbol | |
ID | 8366768 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | - |
Start bp | 453934 |
End bp | 455805 |
Gene Length | 1872 bp |
Protein Length | 623 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644982783 |
Product | alpha amylase catalytic region |
Protein accession | YP_003140486 |
Protein GI | 256819207 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000617875 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTATCT TTGCGCGAAT AAACACCCGT GTAACTTGCA CTATGAAATA CATTATTACC CTTATGGGAC TATTTACTTT TGGAATGACT CACGCTCAGA TTCAGCGTGT AGAACCGCCT TTTTGGTGGG AAGGAATGCA CTACAGCCAA GTGCAGGTAT TGCTCTATGG CAAAAATATC GCTCAGTACA ATGTGGAGAG CGATTTGCCT ATTGTAAACA TACTGAAAAC AGAGAACCCT AACTATCTGT TTGTAACCGT CGATACCAAA GATAAAAAAG CGGGCAACTA TACCATTTCG CTATTGCAAA AGAAAAAGAA AGTGGGCAGT GTTCGCTACG AATTAAAAGC GCGTCGTGAG GGCTCGGCTT ACCGCAAGAG TTTCGACAGC AGTGATATGG TTTACCTGAT TATGCCCGAC CGCTTTGCCA ATGGTAAACC CGACAACGAT TCGCACCCCG CACTTACTGA TAAGCTCAAC CGCTCAGATT CTTTCGGTCG TCACGGGGGG GACATTCAGG GGATTATCGA CCATTTGGAT TATATACAAT CCTTAGGTGC TACGGCTATA TGGAGTACGC CCTTATGTGA GGACAACGAA CCACAACATT CTTATCACAC TTATGCCCAA ACCGATGTGT ACAAAATAGA CCCGCGTTAT GGTACTAATG AAGAGTACCG ACAGCTCTCA GCGGCTTTGC ACAAGCGCGG TATGAAGCTC ATCAAAGATT ATGTAACCAA CCACTGGGGC AGTCAGCATT GGCTCGTGAA AGACCTACCT TGCTACGACT GGTTACACCA ATTTCCTGGT TATGGACAGA GTTCTCTTAA GATAACAACT CAGATGGACA GCAATGCCTC GGAATGGGAC AAAAAGTACT GCGAAAAAGG TTGGTTTGCT CGTTCTATGC CCGACCTCAA CCAAGCGAAC CCATTGGTAC TAAACTACCT CACCCAGAAC GCGATTTGGT GGATAGAATA CGCCGACCTC GACGGTTTGC GTGTGGATAC TTATCCGTAT AACGACAAAG CAGGCATTGC CCAATGGACG AAAGCCATTA CTGATGAATA CCCGCACTTT AACATTATGG GCGAAGTATG GCTTACTGAA AGCGCACAAG TGTCGTATTG GCAAAAGGAT AGCCCTATCA GTGCGATACA AAGCTATAAC ACCCACCTGC CTACGGTAAT GGACTTCCCG CTCTTCGATG CAATAGGCGA GGCTTTCCGT ACCACACCTT CGTGGGACAA AGGTATGATG CAACTCTACG ACAACTTTGC GAACGACTTT CTGTATAAAG ACATCAACAA TCTGCTTATC TTTGCAGAAA ATCACGATAC GGCACGTATC AATCACGTAT ATCCTAAGAT AGAGGATTAT AAGATGATTA TCACATTGTT AGCAACGGCG CGTGGTATTC CGCAATTGTA CTACGGTAGC GAGATAGCAA TGACAGGCGA CAAGAGTAAG GGCGATGGCG ATATACGACA GGATTTCCCT GGTGGCTGGG CAGGCGATAC GCAGAACGCT TTTAGCGCTT CGGGGCGTAC GGCTACTCAG AAAGAGTATT ACGATTTTAC GGCTAAGCTC TTCAATTGGC GTAAGGACAA AGCCGTAATT CACTACGGGA AGACCAAGCA ATACTTGCCT GAAAATGAAG TGTATGTCTA TTTCCGTTAC AACGATACCG AGACCGTAAT GGTAGTGCTC AACAACAGCG AAAAGAGCCA AACGCTCCAC CTAAACCGCT TTGCCGAGAG TTTGGCGGGA TTTTTGAGGG GGAGAGATAT TATCTCGGGG AAAGAGGTCT CTCTGAGTGG TGACACTTTA GAAATATCTG CTAAAACTCC TATGCTCATT GAATTAAAAT AA
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Protein sequence | MLIFARINTR VTCTMKYIIT LMGLFTFGMT HAQIQRVEPP FWWEGMHYSQ VQVLLYGKNI AQYNVESDLP IVNILKTENP NYLFVTVDTK DKKAGNYTIS LLQKKKKVGS VRYELKARRE GSAYRKSFDS SDMVYLIMPD RFANGKPDND SHPALTDKLN RSDSFGRHGG DIQGIIDHLD YIQSLGATAI WSTPLCEDNE PQHSYHTYAQ TDVYKIDPRY GTNEEYRQLS AALHKRGMKL IKDYVTNHWG SQHWLVKDLP CYDWLHQFPG YGQSSLKITT QMDSNASEWD KKYCEKGWFA RSMPDLNQAN PLVLNYLTQN AIWWIEYADL DGLRVDTYPY NDKAGIAQWT KAITDEYPHF NIMGEVWLTE SAQVSYWQKD SPISAIQSYN THLPTVMDFP LFDAIGEAFR TTPSWDKGMM QLYDNFANDF LYKDINNLLI FAENHDTARI NHVYPKIEDY KMIITLLATA RGIPQLYYGS EIAMTGDKSK GDGDIRQDFP GGWAGDTQNA FSASGRTATQ KEYYDFTAKL FNWRKDKAVI HYGKTKQYLP ENEVYVYFRY NDTETVMVVL NNSEKSQTLH LNRFAESLAG FLRGRDIISG KEVSLSGDTL EISAKTPMLI ELK
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