Gene Coch_0333 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_0333 
Symbol 
ID8366739 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp418317 
End bp418967 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content42% 
IMG OID644982754 
Productribulose-phosphate 3-epimerase 
Protein accessionYP_003140457 
Protein GI256819178 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0036] Pentose-5-phosphate-3-epimerase 
TIGRFAM ID[TIGR01163] ribulose-phosphate 3-epimerase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.540612 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTCTCG CTCCTTCATT ATTAGCTGCC GATTTCGGCA ACCTGCAACA AGCCGTGGAA 
ATGGTAAACG CCAGCGAAGC TGATTGGTTT CATATCGATA TTATGGACGG TGTTTTTGTG 
CCTAATATCT CTTATGGTAT GCCCATACTC TCAGTGATTC ACAAACACGC TACTAAGCCG 
TTAGATGTTC ACTTGATGAT TATTGACCCC GACCGCTATA TTAGCACTTT TGCTAAGCTC 
GGTAGTGATA TTCTTACTGT GCATTACGAG GCGTGTACGC ACTTGCATCG CACTATACAA 
GCAATTAAAG CAGAGGGAAT GAAAGCAGGG GTAGCCCTCA ATCCGCATAC GCCTGTCGCT 
TTGTTGGAAG ATGTTATTCA AGATATAGAT GTACTCTTGC TGATGAGTGT GAACCCTGGA 
TTCGGAGGAC AGTCATTTAT TGAAAATACT TATAAGAAAG TGCGTCAAGC TAAAGCACTT 
ATTGAACAAG TAGAGGCACA CGCACTTATA GAAATAGATG GTGGAGTGAG TTTAAAGAAT 
GCTAAAGCAC TTGTAGAGGC AGGTGCTGAT GCCTTAGTAG CAGGCAGTTT TATCTTCAAT 
GCTACTAACC CTACCCAAAC GATTGCGGAA TTAAAAAAAA CAGTATTATA A
 
Protein sequence
MILAPSLLAA DFGNLQQAVE MVNASEADWF HIDIMDGVFV PNISYGMPIL SVIHKHATKP 
LDVHLMIIDP DRYISTFAKL GSDILTVHYE ACTHLHRTIQ AIKAEGMKAG VALNPHTPVA 
LLEDVIQDID VLLLMSVNPG FGGQSFIENT YKKVRQAKAL IEQVEAHALI EIDGGVSLKN 
AKALVEAGAD ALVAGSFIFN ATNPTQTIAE LKKTVL