Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_0305 |
Symbol | |
ID | 8366711 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | + |
Start bp | 384453 |
End bp | 385775 |
Gene Length | 1323 bp |
Protein Length | 440 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 644982726 |
Product | Lytic transglycosylase catalytic |
Protein accession | YP_003140429 |
Protein GI | 256819150 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACACTTA AAAAATATAC ATTGGGAACT CTTTTTTGTT TTTTAATCGG TAGTTTATCC GTTGAAGCAC AGAGCTCGTT CTCCAAAGAT ACCATCAATC AAACTATTGC TAACAACAAA CGCGAAGCTC TTCGCAAACT AAACGACAAC CCTAAGGCAA GAAAATACGA TGAAAAATGG CTAAAAGAAC TCTCTAATTC CGATTTATTC GAGCAAATGA GTGAAGATAT CGCTACTACC CCCACCGATG TAACCTACGA CGAACTTCCC ACTGAAGTCC TCAAAAAACG ATTAGAGAAA CTTAACCAGA AAACTCCTTT CAATGTAGAA TATAATCCTA TCTTGGAACA GGTAATCAAG TCGTTTCTCA AAAATCGCCG TTCTTCTTTA GAGCGCCTAA TGACCCTTAG TGATTATTAT TTCCCGATGT TTGAACAAGA GATGAGTAAT CAAAAGATTC CTTTAGAGAT GAAGTATTTA GCCATTATCG AGTCGGCTCT AAACCCTAAA GCTCGTTCGC GTGCAGGGGC TACAGGCTTA TGGCAGTTTA TGTACAGTAC AGGTAAAGGT TATGGCTTAG AAGTAAATAA TTATGTTGAT GAGCGTAGCG ACCCCATTCG CTCTACCAAA GCAGCTGCAA AATACCTAAA TGAACTCTAT AAAATATTTG GTGACTGGGA TTTAACACTC GCCGCTTACA ATTCAGGACC CGGTAATGTA ACCAAAGCCA TTCGCCGTTC CAATGGCAAG ACTAACTATT GGAATTTGCG CCCTTATCTT CCCAGAGAAA CCGCTGGATA TGTACCGGCT TTCTTGGCAA CTCTCTATAT TTTTGAATAT GCCAAAGAAC ACGGCTTCAA GCCTCAAAAG CGCGCTAATC ACGTTTTTGA AACCGATACT ATCCGCGTAA AGCAAGCTAT ATCTTTTAAA GACATTTCCG ATATTACAGG TATGGACGTA AAAGATATTC AGTTTTTTAA CCCTTCCTAT CAATTAGATG TTGTCCCTTA TGTTGAAGGT CGTAACTACG CCGTGCGCTT ACCTATTTCC GAGATAGGTA AGTTTGTAGC CAACGAAGAG GCTATCTATG CTTATCTAAA TGAAGAAAAA GCAAACCGTG AGCAACCTCT CCCTCAAGTG GTAAAAGGCG ACCAATATGC AGGAGGCAGA TCTTCTAAGA AAACAGTCTA CACGGTAAAG AAAGGAGATA ATTTAGGAAA GATTGCTACA CGGCACGGAG TAACAGTTTC TAATCTCAAA CGCTGGAACC GTATCAAGGG CAGTAATATT CGTGTAGGAC AACGGCTCTC TATCTATAGG TAA
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Protein sequence | MTLKKYTLGT LFCFLIGSLS VEAQSSFSKD TINQTIANNK REALRKLNDN PKARKYDEKW LKELSNSDLF EQMSEDIATT PTDVTYDELP TEVLKKRLEK LNQKTPFNVE YNPILEQVIK SFLKNRRSSL ERLMTLSDYY FPMFEQEMSN QKIPLEMKYL AIIESALNPK ARSRAGATGL WQFMYSTGKG YGLEVNNYVD ERSDPIRSTK AAAKYLNELY KIFGDWDLTL AAYNSGPGNV TKAIRRSNGK TNYWNLRPYL PRETAGYVPA FLATLYIFEY AKEHGFKPQK RANHVFETDT IRVKQAISFK DISDITGMDV KDIQFFNPSY QLDVVPYVEG RNYAVRLPIS EIGKFVANEE AIYAYLNEEK ANREQPLPQV VKGDQYAGGR SSKKTVYTVK KGDNLGKIAT RHGVTVSNLK RWNRIKGSNI RVGQRLSIYR
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