| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0292 |
|---|
| Symbol | |
|---|
| ID | 8366698 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 370339 |
|---|
| End bp | 371439 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644982713 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_003140416 |
|---|
| Protein GI | 256819137 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.390239 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAA TCTTTTTAGT AGCAACCGCT ATCGCAATGG TAGCTTGTAA TAATGGAAAC
CAACAACAAC AGCGACCACA GGGTGCTGTG TCTTACCCTG TGATTGTCGT AGGCGAACAA
AATACCGTGT CTAACCTTTC TTACCCTGTG AATATCGAAG GCGTAGTGAA CAGCGCCGTA
CAAGCCAAAA TATCAGGCTA TATTACCAAA GTATTGGTAG ACGAAGGTCA GGTGGTTACC
CAAGGGCAAC CGCTCTTCAA GTTAGAAACT CAAACCCTTA ACCAGTCAGC TGCTTCAGCC
AAAGCTGCCG TAGAGGTCGC TAAGGTAGAG GTAGATAAAC TCGTGCCTTT GGTACAGAAA
AACATTGTGA GCCCTATCCA GCTCGCCACA GCCAAAGCTA ACTTACAACG TGCCCAAGCT
ACTTATAACG AGGTAGCCAG CAACATTGGT TTTGCCGTAG TAAAAGCACC TGTAAACGGC
GTGGTAGGTG CGATTAACTA CCGCGAAGGT GCTTTGGTAA CTGCCAATAA CACTGTGCTC
ACTACCGTAT CCGACGTGAA AGAGGTATAT GCCTATTTTT CAATGAACGA AAAAGAATAC
CTCGATTTCT TAGACAATAC CCAAGGCAAA ACCACTGCCG AGAAACTCAA AAACCTACCT
GAGGCTTCTT TGGTGTTAGC TAACGGACAA GAATATGCCG AGAAAGGCAA AATACAAGCC
GTAACCGGAC AAATAGACCC TACTACCGGT AGCATACAAT TTCGTGCTAC CTTCCCTAAT
CCTAACAAGT TGCTTACCAA TGGCAACAGT GGGACTATCA AGATACCACA ACATTTTAGT
AACTCACTTG TAATTCCCGA AGTTGCTACC TTTGAGCAAC AAGGAAAGGT ATTTGTGTAC
AAAGTAGAGA ACGACACCCT CAAACAAGCT ATCATCACCC TTAAAAGCCG CGCCGATAAC
TATGCTGTGG TAGAAAGCGG ACTTAAAAAC GGCGATGTCA TTCTCGCGCA AGGACTCAAC
AAAGTGCGTA CGGGTACTGT TATCAAACCT CAACCTATCT CTATGGATAG CCTTGTCAAG
AAAATACAAC CGATATTTTA G
|
|---|
| Protein sequence | MNKIFLVATA IAMVACNNGN QQQQRPQGAV SYPVIVVGEQ NTVSNLSYPV NIEGVVNSAV
QAKISGYITK VLVDEGQVVT QGQPLFKLET QTLNQSAASA KAAVEVAKVE VDKLVPLVQK
NIVSPIQLAT AKANLQRAQA TYNEVASNIG FAVVKAPVNG VVGAINYREG ALVTANNTVL
TTVSDVKEVY AYFSMNEKEY LDFLDNTQGK TTAEKLKNLP EASLVLANGQ EYAEKGKIQA
VTGQIDPTTG SIQFRATFPN PNKLLTNGNS GTIKIPQHFS NSLVIPEVAT FEQQGKVFVY
KVENDTLKQA IITLKSRADN YAVVESGLKN GDVILAQGLN KVRTGTVIKP QPISMDSLVK
KIQPIF
|
|---|
| |