| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0291 |
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| Symbol | |
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| ID | 8366697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | - |
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| Start bp | 368825 |
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| End bp | 370222 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644982712 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_003140415 |
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| Protein GI | 256819136 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.33434 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAGAA TCATTTATAA ATCACTGGCT ATAGTAACCG TAGCCCTTAC CCTTACCGCT
TGTGCAGGAC GCAAAGCCTA TGAGCGTCCA CAAGCCATAG ACGAAAAACT CTTCCGTACT
GAAAGCCCCG CTACCGATGC CCAAAGCGAT GCTACCCTTT CGTGGCGCAA TATCTTCACT
GATCCGCTCT TGCAACAACA CATCAGCAAG GCACTTTCCA ATAACCTCGA TGTGCGTGTA
GCGATGCAAA ATGTGGTTTC AGCACAAGCC TACCTCAAAC AAAGTAAGGC AGCTTTTATT
CCTACCCTCT CGATAGGAGC TAACTATACT CGTAGCACCT CATCATTAAA TGCTGGAGGT
GGTGCTCCCG ACCGTACTTA CAACAATCTG TTCGATATCA CGGGTAGTGC TTCGTGGGAA
GCCGACATAT GGGGCAAGCT ATCCGCTCAA AAACGTGCTT CTTATGCCTC TTATTTAGCA
ACTTTGGAAG CCCAAAAAGC AGTACAGTCC GAAGTGGTAG CTACCTTAGC AACAGCTTAT
TACCAACTGC TGATGCTCGA CGAACAGAAA AAAGTACTCG AACAAACTAT TGAGTTTCGC
ACCAAAAGTT TAGAAACTAC CAAACAACTC AAAAAAGCAG GTTCTATTAC TGAAGTAGCA
ACCAAACAAA TCGAAGCACT CGTGTACAAC GCACAGGCGC AACTTATTAC CATCAACAAT
AGCGTTTGGG CATTAGAGAA TACCATCTGT GTACTCTTGG GTGAAGAGCC TCATACGATA
GAGCGAAGCA CGCTTGCTGA GCAACAATTC CCCACACGGT TTCATCAGGG GTATGCGGTA
AGTCTGCTCG AAAATCGTCC TGATGTGGCA CGTGCCGAAC TGAACTTGCG CAACGCCTTT
GAACTTACGA ATGTAGCGCG TTCCAATTTC TATCCTACGC TTACTCTTTC CGCTCGTGGA
GGTATCAGTA GTACCGAACT CGATACTTGG TTTTCTGCCA AATCGATGTT TGCTAATTTT
ATAGCAGGAT TGGCACAACC TATTCTCAAT CGCCGACAAA TACGCACCCA ATACGAAGTG
CAGAAAGCTG CTCAAGAAAC CGCTTTGCTG AATTTCAAAA AAGCAATTCT TTCAGCGGGC
AAAGAAGTAT CCGATGCAAT GCGTCAATTC AGTTCGCAAG ACGAGTTCAT TCAGCTCAAA
ACCCAAGAAA TGAAAGCCTA TCAAGAAGCT ACCGACTATT CCAAACAACT GTTCGATAGT
GGTATGGTGA ATTATTTAGA GGTCATAACT GCCGAAGTAA ACCGCCTCAA TGCCGAGCTT
AGTGTAGCCA ACGCACAGTT TACCCGTATG CAGTATGGCA TTACTTTGTA TAAAGCATTA
GGAGGAGGCT GGAGGTAG
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| Protein sequence | MNRIIYKSLA IVTVALTLTA CAGRKAYERP QAIDEKLFRT ESPATDAQSD ATLSWRNIFT
DPLLQQHISK ALSNNLDVRV AMQNVVSAQA YLKQSKAAFI PTLSIGANYT RSTSSLNAGG
GAPDRTYNNL FDITGSASWE ADIWGKLSAQ KRASYASYLA TLEAQKAVQS EVVATLATAY
YQLLMLDEQK KVLEQTIEFR TKSLETTKQL KKAGSITEVA TKQIEALVYN AQAQLITINN
SVWALENTIC VLLGEEPHTI ERSTLAEQQF PTRFHQGYAV SLLENRPDVA RAELNLRNAF
ELTNVARSNF YPTLTLSARG GISSTELDTW FSAKSMFANF IAGLAQPILN RRQIRTQYEV
QKAAQETALL NFKKAILSAG KEVSDAMRQF SSQDEFIQLK TQEMKAYQEA TDYSKQLFDS
GMVNYLEVIT AEVNRLNAEL SVANAQFTRM QYGITLYKAL GGGWR
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