| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0253 |
|---|
| Symbol | |
|---|
| ID | 8366658 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | + |
|---|
| Start bp | 330167 |
|---|
| End bp | 331213 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644982673 |
|---|
| Product | secreted protein containing glycosyl hydrolase BNR repeats |
|---|
| Protein accession | YP_003140377 |
|---|
| Protein GI | 256819098 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0299719 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACATA TTGCTATTAT TTTTATATTG CTTTGTCTTG GAGCGTGCAA GCACTCCAAT
CCTTATAAGG ACACTACTAT TGAATTGGTA GAAGTAAAGT CCTTTCCGTT AGAGAAAGTA
AGCGTGCGAG CAATGGTGCT CTTAGAGAAA AACGTGGCTT TTGCAGGCTC CGATGCTACC
TTTGGTTTTA TCAACACACA AAACCAAACT ATTGCAACTT CTAACCTAAA AAACCGCGGA
GTGATTTCGG ATTTCCGCGC AGTGGCAGCA ACGACTCAGA ACTTTTTTAT GCTCTCTATC
GGCAATCCTG CATTGCTCTA CAAAGCAGAA CAAAGTGGTA TGGAAGAAGT GTATCGCGAG
GAACACCCCG ATATATTCTA CGATGTATTG CGCTTTACGG ACGACCAATT TGGCATCGTT
ATTGGCGACC CTATCGACAA TCGCCTATCG GTAGTAACAA CGCACAATGG CGGACAACAA
TGGACGAAAC TCACGTGGTC ACAATCACCC AAACTCGAAG AGGGTGAAAG TGTATTTGCC
GCTAGCAACT CGGCTTTGGC GCACTATGGC AACAAACTAT GGGTAGTAAC AGGCGGCAGT
AAGAGCAGGG TGTTATTCTC GAACAACAAG GGTTATAAAT GGCAAGACCT CGCTACCCTA
CCTCTCGCCC AAGGTTCGGC TACTCAAGGG GCTTTCACCA TAGCTTTCTA CAACGACCAG
CAGGGCATCG CTCTCGGTGG TGATTATGAA CAACCTACAG AGCGCAAAGG CTCTGGCGCA
CTCACTTTCG ATGGGGGTAA AACGTGGCAA CCTATCGCGA CCGACAAGGC TATTGGCTAT
GCGAGTTGTG TGCAATACAT CCCTAATAGT GAGGGAAATG CTTTGGTGGC AACTTCGCCT
AATGGTCTTT TCTTCTCTAA CGACCAAGGT AGGAGCTGGC AACAACTTTC GGATAAATCC
TATCACGCAC TACTCTTTGT TGATGAGCAA ACTATGGTTG CTTCGGGCAA TGAGAAAATC
ACCCTTTTTA GAGTCGTAAA AAAATGA
|
|---|
| Protein sequence | MKHIAIIFIL LCLGACKHSN PYKDTTIELV EVKSFPLEKV SVRAMVLLEK NVAFAGSDAT
FGFINTQNQT IATSNLKNRG VISDFRAVAA TTQNFFMLSI GNPALLYKAE QSGMEEVYRE
EHPDIFYDVL RFTDDQFGIV IGDPIDNRLS VVTTHNGGQQ WTKLTWSQSP KLEEGESVFA
ASNSALAHYG NKLWVVTGGS KSRVLFSNNK GYKWQDLATL PLAQGSATQG AFTIAFYNDQ
QGIALGGDYE QPTERKGSGA LTFDGGKTWQ PIATDKAIGY ASCVQYIPNS EGNALVATSP
NGLFFSNDQG RSWQQLSDKS YHALLFVDEQ TMVASGNEKI TLFRVVKK
|
|---|
| |