Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_0241 |
Symbol | sdhA |
ID | 8366646 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | - |
Start bp | 312785 |
End bp | 314824 |
Gene Length | 2040 bp |
Protein Length | 679 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644982661 |
Product | succinate dehydrogenase flavoprotein subunit |
Protein accession | YP_003140365 |
Protein GI | 256819086 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01811] succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.588419 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTAATT TTATGAGTAC ATTAGATTCT AAAATTCCTG AAGGTCCTAT AGCGGACAAA TGGACGAAAT ATAAAGACCA TATCAACCTC GTAAACCCTG CTAACAAGCG TAATATCGAT GTGATTGTGG TAGGTACTGG CTTGGCAGGA GGTTCGGCTG CAGCTACCCT CGCTGAATTA GGCTACAACG TAAAAGCATT CGCTTACCAA GATTCTCCTC GCCGCGCGCA CTCTATCGCT GCTCAGGGGG GTATCAATGC CGCTAAAAAC TATATGGGCG ATGGCGACTC TAACTATCGC TTGTTCTACG ATACTGTAAA AGGGGGCGAC TACCGCGCTC GTGAGGCTAA CGTATATCGC CTTGCTGAGG TATCTGGCAA TATCATCGAC CAATGTGTGG CGCAAGGCGT ACCTTTCGCT CGTGATTATG GTGGGCTACT TGATAACCGC TCTTTCGGTG GGGTATTGGT TTCTCGTACT TTCTATGCCA AAGGTCAAAC AGGACAACAG CTTTTGCTCG GTTGCTATGC CGCAATGAAC CGCCAAATTG CTCGTGGTAA AATAGATATG TACAACCGCC ACGAAATGCT CGATGTGGTA ATAGTAGACG GCAAAGCTCG TGGTATCATC GCTCGTAACC TTGTTACTGG TGAAATTGAA CGCCACTCTG CTCACGCGGT GGTTATCGCT TCTGGTGGTT ATGGTAACGT ATACTTCCTT TCAACCAATG CGATGGGCTC TAACGCTACC GCAGCTTGGA AAATCCACAA AAAAGGTGCT TACTTTGCTA ACCCTTGCTT CACTCAAATC CACCCTACTT GTATCCCTCG TTCAGGTGAC TATCAGTCTA AATTGACTTT GATGTCTGAA TCTTTGCGTA ACGACGGACG TATTTGGGTG CCTAAGAAAA TGGAAGATGC TGTAGCGATA CGCGAAAAAC GCAAAAAACC TACTGAAATC CCTGAAGAAG ACCGCGATTA CTACTTGGAA CGCCGTTATC CTGCTTTCGG TAACCTCGTG CCTCGTGACG TAGCTTCACG TGCTGCTAAA GAACGTTGCG ATGCAGGCTA TGGAGTAAAC GAAACAGGTG AAGCTGTTTA TTTGGATTTC TCTTCTGCTA TCGAACGTTA CGGTAAAGAA CAATGTAAAA TTCACGGCGT AGAACCTACT AAAGAAGAAG TTACCAAGCG TGGTGAAAAA ATCGTAGAAG CTAAATACGG TAACCTTTTT CAAATGTACG AAAAGATTGT AGCCGAAAAC CCTTATAAAA CTCCAATGAT GATTTATCCT GCTACTCACT ACACTATGGG TGGTATTTGG GTAGATTACA ACTTGATGAC CACTATACCT GGTTGTTATG CTATCGGTGA GGCAAACTTC TCCGACCACG GGGCAAACCG CTTAGGAGCT TCTGCCTTGA TGCAAGGTTT AGCTGATGGT TACTTTGTAT TACCTTACAC TATTGGCGAT TACTTATCCG CTGATATCCG TACCGGTAAA ATCCCTACTG ATACCCCTGA GTTTGACGAA GCAGAACGCA TCGTAAAAGA ACGTTTGGCT TACTTCATCA ACAATAAGGG TACCCACTCT GTAGATTACT TCCACAAAAA ACTTGGTAAA GTGATGTGGG ATAAAGTAGG TATGGCGCGT AATGCTGAAG GCTTGAAAGA AGCTATCAAA GAAATACGCG AAATACGCGA AGATTTCTGG AAAAACGTAA AAGTACCTGG TGAACTCACT GGTATGAACG TAGAGCTTGA AAAAGCAGGT CGTGTAGCCG ACTTCCTTGA ACTTGGTGAG TTATTTGCTA AAGACGCTTT AGAACGTAAT GAGTCTTGTG GTGGTCACTT CCGCGAAGAA TATCAAACTC CTGATGGTGA AGCTCTCCGC GACGACAAAA ACTATGCTTA TGTAGCCGCT TGGCAATACA CTGGTAATCC TAAAGAAGTA GTGAATACCT ACAACCCTAG TGAAGAGGTA ATGCATAAAG AACCTCTTGT ATTTAAAGAT ATTGAACTTA AACAACGTAG TTATAAATAG
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Protein sequence | MLNFMSTLDS KIPEGPIADK WTKYKDHINL VNPANKRNID VIVVGTGLAG GSAAATLAEL GYNVKAFAYQ DSPRRAHSIA AQGGINAAKN YMGDGDSNYR LFYDTVKGGD YRAREANVYR LAEVSGNIID QCVAQGVPFA RDYGGLLDNR SFGGVLVSRT FYAKGQTGQQ LLLGCYAAMN RQIARGKIDM YNRHEMLDVV IVDGKARGII ARNLVTGEIE RHSAHAVVIA SGGYGNVYFL STNAMGSNAT AAWKIHKKGA YFANPCFTQI HPTCIPRSGD YQSKLTLMSE SLRNDGRIWV PKKMEDAVAI REKRKKPTEI PEEDRDYYLE RRYPAFGNLV PRDVASRAAK ERCDAGYGVN ETGEAVYLDF SSAIERYGKE QCKIHGVEPT KEEVTKRGEK IVEAKYGNLF QMYEKIVAEN PYKTPMMIYP ATHYTMGGIW VDYNLMTTIP GCYAIGEANF SDHGANRLGA SALMQGLADG YFVLPYTIGD YLSADIRTGK IPTDTPEFDE AERIVKERLA YFINNKGTHS VDYFHKKLGK VMWDKVGMAR NAEGLKEAIK EIREIREDFW KNVKVPGELT GMNVELEKAG RVADFLELGE LFAKDALERN ESCGGHFREE YQTPDGEALR DDKNYAYVAA WQYTGNPKEV VNTYNPSEEV MHKEPLVFKD IELKQRSYK
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