Gene Coch_0228 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_0228 
Symbol 
ID8366633 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp302447 
End bp303529 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content43% 
IMG OID644982648 
ProductDAHP synthetase I/KDSA 
Protein accessionYP_003140352 
Protein GI256819073 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2876] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 
TIGRFAM ID[TIGR01361] phospho-2-dehydro-3-deoxyheptonate aldolase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.276027 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAATAA CCAAAGAAAA TAGACAGTGG CTTGATGACT TACACCTTAA CCACCCCGTA 
GTAATTGCTG GACCTTGCAG TGCTGAGACT GAAGAACAAG TACTGAAAAT AGCACATAGC 
CTAAAAGATA CTGATGTATC TTTCTTCCGT GCAGGTATTT GGAAACCTCG TACCCGCCCA 
GGTATGTTTG AAGGTGTAGG AGCGTTAGGT CTCAAATGGC TACAACGGGT AAAAGAAGAA 
ACGGGACTCA AAACGGCTAC CGAAGTAGCC AATAAAGACC ACGTGAAGCT TGCCTTGGAG 
CACGATATTG ATATGTTGTG GATAGGAGCG CGCTCTACTG TGAGTCCGTT TATTATTCAA 
GAAATAGCCG ATGAGTTAGA AGGCACTGAT AAGATTATCT TGGTAAAAAA TCCTGTAAAC 
CCCGATCTTC CGTTATGGAT AGGAGCTTTG GAACGATTAC AACGCGCAGG CATCAGAAAA 
TTGGGGGTGA TACATCGCGG ATTTTCTACT TACGAAAAGA CCAAATACCG CAATATTCCT 
GAATGGCAAT TGGTAATTGA ACTGCAAAAC AAGTTCCCTG ACTTGCCACT TATTTGCGAC 
CCTTCGCATA TCACCGGCAA ACGCGATATG ATTTTTGATG TATCGCAAAC GGCTCTCGAC 
TTAAACTTCG ATGGCTTGAT GATTGAAACG CACTGTACCC CTGATGCTGC GTGGAGCGAT 
GCAGCACAAC AGATTACCCC TGAACGCCTC ATACAAATAA TGAAGGATTT GCGCATTCGC 
GAGGCTTCGG TATCTGAGGA AGACTATGTG AGTAAGTTAA GTAATTTGCG TTCGCGCATT 
GATATACTGG ACAATAAATT ATTGGATTTA CTGAAAAGAC GTATGGAGGT AGCCGATGAG 
ATTGGAATGC TGAAAAAAGC GAACAATGTA GCGATTTTAC AAAACCAACG TTGGCACGAA 
ATTCTTGGCA AAATGATATC AGAAGGCGAA CAACGCAACC TAAGTGAGGA TTTAGTGATT 
CAGGTATTTA AGGCAATTCA CCAGGAGTCT ATCAATAGAC AGGAGAGAGT GGTTAAGAGT 
TAA
 
Protein sequence
MEITKENRQW LDDLHLNHPV VIAGPCSAET EEQVLKIAHS LKDTDVSFFR AGIWKPRTRP 
GMFEGVGALG LKWLQRVKEE TGLKTATEVA NKDHVKLALE HDIDMLWIGA RSTVSPFIIQ 
EIADELEGTD KIILVKNPVN PDLPLWIGAL ERLQRAGIRK LGVIHRGFST YEKTKYRNIP 
EWQLVIELQN KFPDLPLICD PSHITGKRDM IFDVSQTALD LNFDGLMIET HCTPDAAWSD 
AAQQITPERL IQIMKDLRIR EASVSEEDYV SKLSNLRSRI DILDNKLLDL LKRRMEVADE 
IGMLKKANNV AILQNQRWHE ILGKMISEGE QRNLSEDLVI QVFKAIHQES INRQERVVKS