| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0226 |
|---|
| Symbol | |
|---|
| ID | 8366631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 296662 |
|---|
| End bp | 298332 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644982646 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003140350 |
|---|
| Protein GI | 256819071 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.402875 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA TAATATATAC CACCACAATA TTTGCAACTC TACTTACAGG TTGCAACTTC
TTAGACGATA ATCCACAAGG GATTATGACC GAGAAAGAAG CTATCTCTAA AGCCGATGAG
TTGGTAACTA CTGCTTATTC GTCTTTGGGT AACGACCACT ACGATGTACC TTTTAGTCTT
TGGATTTACG GTAACGTACG TGCCGATGAC GCTTATAAAG GCGGACAAGA CGTGAGCGAT
ATCCAGCATT TCCATTTCTA TGAAATCGCT CAGAATATCG ACCCTACTTT TGGTGAAGCT
GACCGCTTTT GGTTTATGTG TTATATGGCT ATTTCGCGTA CCAATACTGC TCTGAAAGCC
TTGCAACAGG CTTCCGATGC TGAAGTAGTA AATCGTCAAT CGCGTATGGG CGAAATGTAT
TTCTTACGAG GTCATTTCTA TTTCGTGTTG AAGACTATCT TTGGGCATAT TCCTTTTGTA
GATGAGAATA CACCTGATAG TGCTTACGAA ACCACCCCTA ACACTTTGCC TAATGATGAA
CAATGGCAAA AAATAGTAGC CGATTTCAAA AAAGCTTACG ACTTATTGCC TAATACCCAA
CCTCAAAAAG GTAGAGCTGA TAAATATGCA GCAGCAGCTT ATTTAGCTAA AGCCTATTTG
TACAAAGCGT ATCGCCAATC AGAAAACAAT AGTGTAACAG GTATCAATAG CCAAGATTTG
CAAGAGGTAC TTACTTATAC AAGTTTTGCA TTAGGTTCTT CTTATGGTTT GGAAGATGAC
TTTGCGTTTA ACTTCCTCCC CGGTGGTTAT GAAAATGGTA AAGAATCTCT CTTTGCGGTA
CAATACTCAG TGGACGATGG TACCCAGTAC GGACGTCTCA ACTGGGGTGA TCAGCTCTCT
ACTCCACAGA AGTTAGGGTG TTGTGATTTT CATAAACCAA GTCAGAATTT GGTAAACGCC
TTCAAAACAG TGAATGGCTT ACCTGATTTT GATAACTTCA ACAACAACGA TTACAACGCT
GCTAGTGATA AAGCCGACCC TCGTTTGTTC CACACTGTTG CCTTACCTGG CTTGCCTTAT
AAGTACAACA CCGAGTTGAT TTACAAGAAC GACTGGAACC GCAATAGCAA TGTGTATGGC
TTCTATGCAT CACTCAAAGA AAATGTAGAC CCTTCTTGCT CTTGCTTCCG CAATATCAAC
CCTTTCCGCG GTAACTCTAA GAATCGTATT CTTATCCGTT ACGCCGATGT ACTTCTAATG
CGTGCCGAAG CTCTTATCGA GCTCAACCGT AGCAACGAAG CCCTTGCACT TATCAACCAA
GTGCGCCAAC GTGCTAAACA AAGTACTTCG CTTATCGGTT ATGCCACAAA CACCGATATA
GCCTTGTACC AAGATGGAGT AAACATCACT TGGAATCAAG AAAACGCACG CAAAGCACTC
CGTTGGGAAC GCCGTTTAGA GTTTGCTATG GAAGGCTCTC GTTTCTTCGA CCTTGTACGC
TGGGGTATCG CCGACCAAGT ACTCAACGAC TATTTCACTA AAGAGAAAAC ACGTCGTCCA
GCGATATTCA GCAGTGCTTA TTTCACTAAA AATAAAAATG AGTATATCCC TATTCCACAA
AACCAAATAG GGTATGTAAA AGGTATTTAC AAACAAAATG CAGGATTCTA A
|
|---|
| Protein sequence | MKKIIYTTTI FATLLTGCNF LDDNPQGIMT EKEAISKADE LVTTAYSSLG NDHYDVPFSL
WIYGNVRADD AYKGGQDVSD IQHFHFYEIA QNIDPTFGEA DRFWFMCYMA ISRTNTALKA
LQQASDAEVV NRQSRMGEMY FLRGHFYFVL KTIFGHIPFV DENTPDSAYE TTPNTLPNDE
QWQKIVADFK KAYDLLPNTQ PQKGRADKYA AAAYLAKAYL YKAYRQSENN SVTGINSQDL
QEVLTYTSFA LGSSYGLEDD FAFNFLPGGY ENGKESLFAV QYSVDDGTQY GRLNWGDQLS
TPQKLGCCDF HKPSQNLVNA FKTVNGLPDF DNFNNNDYNA ASDKADPRLF HTVALPGLPY
KYNTELIYKN DWNRNSNVYG FYASLKENVD PSCSCFRNIN PFRGNSKNRI LIRYADVLLM
RAEALIELNR SNEALALINQ VRQRAKQSTS LIGYATNTDI ALYQDGVNIT WNQENARKAL
RWERRLEFAM EGSRFFDLVR WGIADQVLND YFTKEKTRRP AIFSSAYFTK NKNEYIPIPQ
NQIGYVKGIY KQNAGF
|
|---|
| |