| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0223 |
|---|
| Symbol | |
|---|
| ID | 8366628 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 291150 |
|---|
| End bp | 293366 |
|---|
| Gene Length | 2217 bp |
|---|
| Protein Length | 738 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644982643 |
|---|
| Product | Levanase |
|---|
| Protein accession | YP_003140347 |
|---|
| Protein GI | 256819068 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1621] Beta-fructosidases (levanase/invertase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.060447 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAACA AACTAATAGC AGGATTAGGA GTCTTAACGC TCACTGCCTG CCAGCAAAAC
ACCGATAACC TCATTATCGA GGACTTCGAG TCGGGCACTT ATGCCAATTG GACGGTAGAA
GGCGACGCCT TTGGCGCGAC TCCCGCCACC GGTAGCTATA CCGGTCAGCA GCCCGTAATA
GACTTTGAAG GCAAATTCCT CGCCAACAGC TTCAACAACG GCGACGACTC TCGAGGAACG
CTTACGTCAA AAGAGTTTAC TATCAAGCGT GATTACATCA ACTTCCTCAT AGGAGGAGGT
ACGCACCCTG ATACCTATAT CGAGCTTTTA GTCGAGGGGA AAAGTGTGCT ACAAACGCGC
TCTCTATTCG AGACCGAAAC CCTACAATGG CTCACTTGGG ACGTAAAACC CTATAAAAAC
AAGAAAGCTA CTATCCGCAT TGTCGATAAC CAACGTGGCG GATGGGGGCA TATCCTCATC
GACCAAATCG AACAAGGCAA CAAACAAAAA AGCGTTTTTA TGACTGATTA CACCCGTACC
TTTGAAGCCA AAGACAAGTA CCTGCTCATC CCTATCGAAG ACCAAGCAGT TGAAAACAAA
GTTCAACTCT CGGTAGACGG GACTCTTGTA GGCGAGCCAA TGACGATACG CATCGCCCAA
AACAAAATAG ACTACTGGAT GCCTATCGCT ATCGAGGCGT ACAAAGGCAA GAAAGTAACC
CTTACTTTCG CAGTAGCCAA AACTACCGAT ATGGGATTAG CCGAAATCAA ACAGTCGGCT
GAATATAACT TCAACTACAA CGAAAAATAC CGTCCGCTAT ACCACTTCAC CCCTCAATAT
GGCTGGATGA ACGACCCTAA CGGAATGGTA TACCTCGACG GAGTATTCCA CCTCTTCTAT
CAATACAACC CTTACGGAGC GCGCTGGGGC AATATGCACT GGGGGCACAC CGTTTCCAAA
GACTTGGTGA ATTGGGAATA CAAGCCTTAT GTATTAGTCC CCGATAAGTT AGGAGCGATT
TTCTCAGGCA GTGCTGTGAT TGACCACGAG AACACAGCCG GCTTTGGCAA AGGAGCTATG
GTGGCTATTT TCACCTCAGC AGGCGAACGC CAAACCCAAT CTATTGCTTA TAGCCTCGAT
GGCGGAAAAA CCTTCACCAA ATACGAAGGA AACCCCGTAC TCACTGATGC CAATATCATC
GACTTCCGCG ACCCGAAAGT ATTCTGGCAC GCACCCTCTA AACAATGGGT GATGAGCCTT
GCCACTACCC AAACCATTAC CTTCTATGGT TCTAAGAACC TCAAAGAATG GACACGCCTC
AGTGAGTTTG GCGAAGGCTT AGGCGGACAC GGCGGTGTGT GGGAATGCCC TGATCTCTTC
CCGCTTACTT ATGAAGGAAA AACCAAATGG GTGCTCTTCG TGAGTATCAA CCCAGGAGGA
CCTAACGGCG GAAGTGCTAC TCAGTACTTT ATCGGTAATT TCGATGGCAA AACCTTCACC
CCCGATACTA TGAGCTATCC GCTTTGGTTA GACTACGGAC GTGATAATTA TGCAGGTGTA
ACGTGGAGTA ATGTCCCCGC TACCGATGGT CGCCGTCTCT TCATAGGCTG GATGAGCAAC
TGGGATTACG CCAATGAAAC CCCTACTCAA AATTTCCGTA GCGCGATGAC CGTTGCCCGC
GTTTTGCGTT TGGTGCATAA TGGCGAGCAC TTGGTAGTAG CCAGTGAGCC CGTAAAAGAG
TTGGAGAGCT TGCGTCGTGA AGCAGTGCTT TTAGGTGATA AAACACGTAC CAACACCTCT
GATGCTATAA CGTTCGAAAA CTTCTTGCCC AATAATCAAG GCGCTTATGA ACTCACTTTC
ACGGTAACCC CTAACGAAAC CGATAGCTTT AGCTTTGCCC TTGAGAACGC CAAAGGTGAA
ACTATCAAAT ACCTATTTGA TGGCGCTAAT AAAACTCTAT CGGTAGACCG CAGTAAGAGC
AGTGTAGCCT TCAATGCCAA CTTCGCCGAA ACGCTTATCA AAGCACCAAT GGTAGCTAAG
AAAAGCTATA CCGTACGCTT ATTGGTAGAC AAATCTTCTA CCGAACTCTT TGTGAACAAC
GGCGAAGTAG TACAAACCAA TGCGGTATTT CCTAGCGAAG TGTACAATAC CCTCCGCTTC
AATACCAGCA AAGGTACCCT CACTCTTAAC AATGTAACTG TCTATAAATT GAAATAA
|
|---|
| Protein sequence | MNNKLIAGLG VLTLTACQQN TDNLIIEDFE SGTYANWTVE GDAFGATPAT GSYTGQQPVI
DFEGKFLANS FNNGDDSRGT LTSKEFTIKR DYINFLIGGG THPDTYIELL VEGKSVLQTR
SLFETETLQW LTWDVKPYKN KKATIRIVDN QRGGWGHILI DQIEQGNKQK SVFMTDYTRT
FEAKDKYLLI PIEDQAVENK VQLSVDGTLV GEPMTIRIAQ NKIDYWMPIA IEAYKGKKVT
LTFAVAKTTD MGLAEIKQSA EYNFNYNEKY RPLYHFTPQY GWMNDPNGMV YLDGVFHLFY
QYNPYGARWG NMHWGHTVSK DLVNWEYKPY VLVPDKLGAI FSGSAVIDHE NTAGFGKGAM
VAIFTSAGER QTQSIAYSLD GGKTFTKYEG NPVLTDANII DFRDPKVFWH APSKQWVMSL
ATTQTITFYG SKNLKEWTRL SEFGEGLGGH GGVWECPDLF PLTYEGKTKW VLFVSINPGG
PNGGSATQYF IGNFDGKTFT PDTMSYPLWL DYGRDNYAGV TWSNVPATDG RRLFIGWMSN
WDYANETPTQ NFRSAMTVAR VLRLVHNGEH LVVASEPVKE LESLRREAVL LGDKTRTNTS
DAITFENFLP NNQGAYELTF TVTPNETDSF SFALENAKGE TIKYLFDGAN KTLSVDRSKS
SVAFNANFAE TLIKAPMVAK KSYTVRLLVD KSSTELFVNN GEVVQTNAVF PSEVYNTLRF
NTSKGTLTLN NVTVYKLK
|
|---|
| |