| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0160 |
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| Symbol | |
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| ID | 8366562 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 189375 |
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| End bp | 195872 |
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| Gene Length | 6498 bp |
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| Protein Length | 2165 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 644982579 |
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| Product | YD repeat protein |
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| Protein accession | YP_003140286 |
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| Protein GI | 256819007 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAGT TGTTATTATT ACTATCTGTT TGTTATACTC TTGGCAGTGT AGCTCAAGAG
ACTTACCCTT TGCAGGCTAT TGAACGCACT TCATTTTATG CAGAGCCTGT TGACCCTCCT
ACTGAAACGG CACTTCCTTC GGGGAACATA GCAGCACGAG ATGGTGGCGG TAATACTGTG
GGCTTGACTA CGGGTGAACT GAGTGTATCA GGCACGGGTG CAGCAGTGTA TACCGTGCCT
ATTGCGGTAC CTCAAGGGAT TAAGGGCGTT GCCCCTACCT TGGCACTGAC TTACAACAGC
CAGAGTGGTA ACGGCATTGC GGGTTATGGT TGGCACTTAG CGGGGCTTTC GGTGATAAGC
CGAGTAGGGA GCACGATGTA TCACAATGGT AAGATTACCG AAGTAAACCT TACGGAAACA
GACCAGTTTG CTTTGGACGG ACAGCGATTG ATGCTGAAAG AAGGAGTATA TGGCAAAGCA
GGAGCTACTT ATCAAACAGA AGTTTTTTCT GATTTAAAAA TAAAACAACT CTCAGAGGGT
GCTACTATGG GATTTGAAGT ATTGTACCCT GATGGCTCTA AAGCGTATTA CGGGCAAACA
GAGGACAGTA GGTCTCCTGT AGTGTATGCT ATAACTTACA GGGAGAATGC GCAAGGGGTG
CGTATATCTT ATACTTATGA GCGCAGAGGG AATATGCTTT TCATAAAAGC CATTACCTAT
GGCAAACAGG GTAATATTAC AGGAGATAAG AAAATAGAAT TTTACTATGA TAGACCCCGT
AGGCGACCAG AAGTTTCGTA TGTGGGAGGT ATCCGATTTG AAGATACCTC ACTCTTGGAT
AAAATTATAG TAACTTCAGG AGCAAAGGAA TATAGGAAAT ATATCCTTGA TTATTTAGTA
GAAGAAAAGC CAGAAGAAAC CTTATTTTAT GACCGATTGC TCACAGTACA AGAATGGGTG
GATAACGAGA AGAAAGCACC TATCACTTTT TCATATTTAC AAACAAAAGC AGGATTTAAA
GAAGAAATAA GCACCTATAC ATTACAGAAT ATGCAATATA TCTCTTTTGA GAATACCAAA
GCAGTTCCTT TGGATTTTGA TGGAGATAGG TTGATGGATT TTATTTTAAT TTTATATAAT
TCTACCAGTG GAAATGGCAC ATACAACACT GTATGCGCTT TTGATGATTA TAGAAAAGGA
TGGGGACAAA AACCTGTGCT TTATCCACAA CAAATAGCGC CTTTTAATCA ACTATTTTCT
GCAAAAGTTT TAACAGGTGT AAACAAAAAT ATATTTACGG GAGCAGAAGG ATTCATAACA
GTAGATGAAA AAAAGGATAA ATTAGTGTTT CGTACCTATG TAAAAGGTTC TGCTTCACCA
ATAGAAAAAT GGGGTGATGA TATAGAATGG AATTTACCCA CTTATGATGA AAGAAATGCC
TTTTGGTGCT ATGATAAGAT AAAGGATAAT AAAGTAAGAA GACCTAAGGG GATACCTATC
AGGATGTGGT TTTATCATAC TTTTGTACCA GAAAAAAAAC AGGTACCTAT TAAAATACTC
TCAGGTGATT TTGATGGAGA TGGTTTAACA GAAATACTTG CGGTTGAAAA AAGTTATGAA
CGTAATGAGT GTGCTCCAAA AGAAAAATAT GTGTTAGAAG AAGATGATTA CTATAATTCT
TATGAATATC CCTACTATCC AGAACAAGCT TGTGATTGTC GAACATATAT TGATGGAGGT
TTTTCGATAT ATTGGGTAAA ATCGAATGCA GAAAAAAACA GTTATACAAA AGAAGTAGGG
TCGCTCTTAA ACCAATATAA GCATAACGAT TTACTTTATA CATTAGATGT GACAGGTAAT
GGTAAAACGA ATCTTATTCA CATTACAGAA GGGAGAATTT ATATTTATGA GTTTGATGAG
AATTTAAAAC CTCACTTACT ATGGGAATAT TCACACCCTT ATATCAAATC ACTATCAAAG
CAACCTATTG CAGGCGATTT TAATGGTGAC GGTAAAATGG ACTTTTTACT TCCAAAAGAA
AAAGATAGTA ACAAGTTTGT ACTACTGACA AATACAGGAA ACTCCTTTGA AGCTTCGCCG
GATATTGATT GTCCGTTTAC TTATAGAGAG TCATATAAAC AACGTAAAAT AGATAAGGCT
AATACTTCTT TTTGGAAATG GATAGATCCT AAATGGGTTG AATATGAAGT AACGCATTCT
CATAGTTTAA TTCCTATAGA TCTTAATAAT GATGGTAAAA CCGATATTGT AGAGACTTAC
TCTAATAGAG TTTCTACTGA TGAATTTCCT GAGGAAAAGA AAGAAAGCTA TCTCAAACTG
TATGAAAACA TACAGATGAG CACACTTGCA TTTCGTAAAG GCGACACTTA TACTTATCCT
TATACAGGAT ATATACCTCA TTATATATTT TCTCCCTCAG ATGAGAGAGG CATATTTATG
GATATTTCAC TTGTATCAGG AAATACAATC AAAGTTATAC GCTCAGAGAA AAATAGCAGA
AAGGATATGC TATTAGGGAC AGTATTACAG AAAAACATAG CTCATAAGGT ATATTATCAA
CCAATGACTG AAAAATTTCC TTACGATTAC AACAATTTAA ATGCAGATGA AATATTTACT
TATCAAGGTG GAAGTGGAGA ACAGTTCCCT TATATTGATC TTAAAAATGA ACCTTCACTA
TTTTTAGTAA ACAAATTAGA ACGTAATGGA GGAGGACTAC CTGATGCTGA ACAACAGTTT
AAATATGTAG GAGGGGTATC GCATTATACG GGCTTAGGAT TTTTAGGCTT TAAGTCGGTA
GGCAGAACTA ATTGGTATGT TCAAGGGAAA GAGTCAGACG AGATTCTTTA TACATTCACC
TATAACAATC CTCAATTGCG AGGGGTTACT ACTGAGGAAT ATGAATTTGA CTATATGGTG
CGTAAATATA ACAAAGAGCT TTTGACAACT AATTATCTTA AAAAAACTTC TTATACGTAC
CAAAATCTTA CCAACTCTAA CAAGATTTGC CGCATACAAC TCACCGAGAA AAACACTGAT
AACAAACTCA GTGGGGTAAC CTCCTCTCAA AAAATATCTT ATAATACAGA TGGGCTACCT
ACACGAGTGG AAACTATGGC AGGAGCCTCT AAAAGTACTG CAGAAACGAC CTATGCCCCT
AAAAGTGAAT CGCCTTACTT AGTAGGAAGG GTGGCTTCGC AGAAGGCTTC TAACACTATA
GATGGTGATA CTTTTACTAC TGAAGAACAG TATACTTATC AAGGAAATTT AGTTACTACC
CATAAGGCAA AAGGACATCA GACAGGTTTT AAAACAGAGC AGTTTACTTA TGACGAAGTA
GGTAATATCA CCCAAAAAGA GGTAACCACC GAAAGTGGCA AGACACGCCG AGAGCAAATG
GAGTATGACG CCTCAAAACG CTTCTTGAAA AAGCACACTG ATTTTGAGGG ACAAGATAGT
ACTTACCTAT ACGACGATTA CAACGGTACC TTATTACAAG AGACCAATCA CTTTGGACAA
ACCACTCGTT ATGCTTATGA CGCTTGGGGA CGAACAACCA AAGCTACCGA CTTTCTCGGC
AAAAGTGTTT ACACTACTTA TAGTACTGAT GCTTCAGGAT ATACAACAGC TACACGTGCT
GATGATGGTA GCGAAAGTGA AGAAAAATAC AGTTGGTTAG GACTCTTGCA ATATAGCAAA
GCTAAAAATG CTTTTGGGCA AAATGTAATG GTAAGCTACC AATACGATGC CCAAGGAAGA
AAAATAAGAG AGAGCTTGCC TCACTTTGAA GACAAGGCTG AAAATTGGAT TGTTACCACT
TATGACCGCT ATGGCAGAGT GACCCAAACA CAACACCCAA CAGGGAAAAC TACCCAGATA
AGTTACAACA AGCTAACTAC TACTATAAAC GATGGTAGTA AGACGGTGAT TACTACCCAA
AACGCAACAG GGCAAACGGT AAAACAAGAA GACCCCGGAG GTACTATTAC CTATAGCTAT
TTTGGTAATG GCAACTTAAA GATGGCACAA TATGAGGGCT CTGTACAACG CATTACCCAA
GATGGTTGGG GACGCAAAAC GAGCCTCACC GACCCTTCGG CGGGACGTTA TACTTATGAG
TATGACGATT GGAGCAGGCT TACCAAAGAA ACCACCCCCA AAGGTAGTAC TATTTACGCT
TACGAGGGAG AAAGCGACCG TGTAAAGGAA AAACAGATCA CAGGTGAGTA TACCGATATG
CGCCTTGCTT ATACCTACAA TAACGACAAA CTGCTCACTC AACTCAGTTT GCAAAACAAG
GATGGTAATA ACGAACTCTA CACTTACAAT TACAACCCTA ATAGACAACT GAGTGAACTT
ACTGAAAAGA AATTAGGTAG CAACCTCACT TTTATTCAAA AATACGCTTA TGACGATTTT
GGACGTACCA CTCGTGAGAC CTATACAGCC GATGGCTATG GTAAACACAT CACTACTCAA
TTGTTATATG AATACCAAAA TGGAGAAGCA ACTACTCTGA AAAAAGCTTC AGGAGAAGTA
TTGTGGCAAT TGCAAGAAGT GAATGAGTAT GGAGCTCCTA TACGGCAGAT AAAAGGAAAA
ACTACCGAAA CCTACCAATA CGATTTTCAT TACCCCGTAA GTCAGCTCAT AAGCAATGAG
CAAATTACCT TAGAAACAAA GGTTTACCAA TTTGACAGAG CTAAAAGTTT ACTGAACGAA
CGTACCTATA GTTTTAACGG TGCTAAGGAG ACTTTTGGCT ATGATGCGCA ACAACAGCTT
ACCTCGTGGA AAGGTACAGG AACAGAAGGT GCGCAGACGT ATGACTTGAG AGGACGTATT
GAACAAAACA ACCAATTAGG TCGTTATGAA TACGCAGGTA GTAACTACCG CCAACAAAGG
CTTATTACTA ATGAAGCAGG CGATACCCAT TTAGAAAAAT ACCCTTTTCC TGCAATTCGC
TACAATGTTT TTAAAGCTCC AGAGCAAATA TATGTAAAAG ATAAAGAGCG GATAAGCTTT
GAATATGATG CTTTTGAGAG TAGAGCCACA ATGTACTACG GAGGTACAGA CCCCGAAAAG
CAAAAACGCC GTTATGTTAA ACACTACAGT CACGACGGCA CTTTTGAGGT AAAACACGAT
CGCACTACAG GGCTAATACA ATTTTATATT TACTTAGGCG GAGATGCCTA TAGCGCTCCA
GCAGTGCTCT CAGTTACTGA TGACAGTGAA AAATACCTAT ACTTGCATCG CGATTATTTG
GGTAGTATTA CCCTTATCAC CGATAACACA GGTAATGCAA TAGAGAGACG GCATTTTGAT
GCTTGGGGCA ATATCACGAA CTATTGGAAT GCCGAAGGGA AAACTACTAT CCCTGCGGAA
GGTATATTGT TAGATCGTGG CTATACAGGG CACGAACATT TACAAACGGT AGGCTTGATA
CATATGAACG GACGGTTGTA CGACCCAGCC TTACACCGTT TCTTACAACC TGATAACTTT
GTACAAGACC CTTTTAACAC CCAAAACTTT AATAGGTATG GATATTGTTT GAATAACCCA
TTGGTGTATG TAGATAAGAA TGGAGAAATT GTTTGGTGGG TAGTTGGAGT AGCGGCATTA
ATAGGAGCTT ATACAGGAGG AACTATAGCT AATGAAGGAG AAGCTAATCC TATAAAATGG
AATTATGCTG ATAATTGGGG ATATATTTTA GGAGGAGCTG CGATAGGTGC TATTAATGGA
TATGTATCAC AATTAGTGGG GGCAATGATA CCCATAGGGC AGAGCGGTTT TGGGATAAGC
ATAACGCCAC AGTTAGTTTT AGGTTCAGAT GGATTAGGGG TTGGTGTAAA TGGAACATTT
GGTTATCAAA CTAATTTTGG ATTAAATATA GGTCTGAATT TTGGAGCTAC TTATTACCTA
AGTGCAATAG GTACAGGTGA GAGTGGTTGG GAAAAAAGAA TAGGATATGG TATAGGTTAT
AAAGGTAAAT CTTTTCAAGC AGGCATAGGT TCTACCTATT TCTTTAGTGG AGAGACTTCA
CAGCAAACAG GGTCTATATA TATGGGAGGA GGCAATTGGC GATTGACCTA TGAGAACGAT
ACCTGGGCAC CTGTACCAGG ACTTTTTACA CCAGGTACTT ACGAGAAAGA CAAATACCGC
ACTGCTGCTT TGCGATTTGA TATCACAGGA GGTAAGCTAA AAGGACTAAA TGCGGGGCTA
AACATTTTTA CAGGTAAGGC GGAAGGCTAT GATAGTGAGA ATATTTACGG TGGAGGTACA
GCAGATAAAT ATCGTATGGG AGTCATTTAT ATAGGCTATA ACCAGTACCG CATAGGTTAT
AACAGCGAAC GCAATATACG AGGTCCTATA CAAAATGGTT TTCACGATAG GATGGGAGTC
CCTCACTTTA GAGTTTTAAG TCTTTCTGAT AGATTTTATT ACGGATTTTA TTCATCAAAT
CCTTATACAT TATGGTAA
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| Protein sequence | MKKLLLLLSV CYTLGSVAQE TYPLQAIERT SFYAEPVDPP TETALPSGNI AARDGGGNTV
GLTTGELSVS GTGAAVYTVP IAVPQGIKGV APTLALTYNS QSGNGIAGYG WHLAGLSVIS
RVGSTMYHNG KITEVNLTET DQFALDGQRL MLKEGVYGKA GATYQTEVFS DLKIKQLSEG
ATMGFEVLYP DGSKAYYGQT EDSRSPVVYA ITYRENAQGV RISYTYERRG NMLFIKAITY
GKQGNITGDK KIEFYYDRPR RRPEVSYVGG IRFEDTSLLD KIIVTSGAKE YRKYILDYLV
EEKPEETLFY DRLLTVQEWV DNEKKAPITF SYLQTKAGFK EEISTYTLQN MQYISFENTK
AVPLDFDGDR LMDFILILYN STSGNGTYNT VCAFDDYRKG WGQKPVLYPQ QIAPFNQLFS
AKVLTGVNKN IFTGAEGFIT VDEKKDKLVF RTYVKGSASP IEKWGDDIEW NLPTYDERNA
FWCYDKIKDN KVRRPKGIPI RMWFYHTFVP EKKQVPIKIL SGDFDGDGLT EILAVEKSYE
RNECAPKEKY VLEEDDYYNS YEYPYYPEQA CDCRTYIDGG FSIYWVKSNA EKNSYTKEVG
SLLNQYKHND LLYTLDVTGN GKTNLIHITE GRIYIYEFDE NLKPHLLWEY SHPYIKSLSK
QPIAGDFNGD GKMDFLLPKE KDSNKFVLLT NTGNSFEASP DIDCPFTYRE SYKQRKIDKA
NTSFWKWIDP KWVEYEVTHS HSLIPIDLNN DGKTDIVETY SNRVSTDEFP EEKKESYLKL
YENIQMSTLA FRKGDTYTYP YTGYIPHYIF SPSDERGIFM DISLVSGNTI KVIRSEKNSR
KDMLLGTVLQ KNIAHKVYYQ PMTEKFPYDY NNLNADEIFT YQGGSGEQFP YIDLKNEPSL
FLVNKLERNG GGLPDAEQQF KYVGGVSHYT GLGFLGFKSV GRTNWYVQGK ESDEILYTFT
YNNPQLRGVT TEEYEFDYMV RKYNKELLTT NYLKKTSYTY QNLTNSNKIC RIQLTEKNTD
NKLSGVTSSQ KISYNTDGLP TRVETMAGAS KSTAETTYAP KSESPYLVGR VASQKASNTI
DGDTFTTEEQ YTYQGNLVTT HKAKGHQTGF KTEQFTYDEV GNITQKEVTT ESGKTRREQM
EYDASKRFLK KHTDFEGQDS TYLYDDYNGT LLQETNHFGQ TTRYAYDAWG RTTKATDFLG
KSVYTTYSTD ASGYTTATRA DDGSESEEKY SWLGLLQYSK AKNAFGQNVM VSYQYDAQGR
KIRESLPHFE DKAENWIVTT YDRYGRVTQT QHPTGKTTQI SYNKLTTTIN DGSKTVITTQ
NATGQTVKQE DPGGTITYSY FGNGNLKMAQ YEGSVQRITQ DGWGRKTSLT DPSAGRYTYE
YDDWSRLTKE TTPKGSTIYA YEGESDRVKE KQITGEYTDM RLAYTYNNDK LLTQLSLQNK
DGNNELYTYN YNPNRQLSEL TEKKLGSNLT FIQKYAYDDF GRTTRETYTA DGYGKHITTQ
LLYEYQNGEA TTLKKASGEV LWQLQEVNEY GAPIRQIKGK TTETYQYDFH YPVSQLISNE
QITLETKVYQ FDRAKSLLNE RTYSFNGAKE TFGYDAQQQL TSWKGTGTEG AQTYDLRGRI
EQNNQLGRYE YAGSNYRQQR LITNEAGDTH LEKYPFPAIR YNVFKAPEQI YVKDKERISF
EYDAFESRAT MYYGGTDPEK QKRRYVKHYS HDGTFEVKHD RTTGLIQFYI YLGGDAYSAP
AVLSVTDDSE KYLYLHRDYL GSITLITDNT GNAIERRHFD AWGNITNYWN AEGKTTIPAE
GILLDRGYTG HEHLQTVGLI HMNGRLYDPA LHRFLQPDNF VQDPFNTQNF NRYGYCLNNP
LVYVDKNGEI VWWVVGVAAL IGAYTGGTIA NEGEANPIKW NYADNWGYIL GGAAIGAING
YVSQLVGAMI PIGQSGFGIS ITPQLVLGSD GLGVGVNGTF GYQTNFGLNI GLNFGATYYL
SAIGTGESGW EKRIGYGIGY KGKSFQAGIG STYFFSGETS QQTGSIYMGG GNWRLTYEND
TWAPVPGLFT PGTYEKDKYR TAALRFDITG GKLKGLNAGL NIFTGKAEGY DSENIYGGGT
ADKYRMGVIY IGYNQYRIGY NSERNIRGPI QNGFHDRMGV PHFRVLSLSD RFYYGFYSSN
PYTLW
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