| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0104 |
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| Symbol | |
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| ID | 8366506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 124713 |
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| End bp | 125246 |
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| Gene Length | 534 bp |
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| Protein Length | 177 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 644982523 |
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| Product | 16S rRNA processing protein RimM |
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| Protein accession | YP_003140230 |
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| Protein GI | 256818951 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
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| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACTTTAA AAGATTGTTT TTATATAGGA ACAATTGTGT CGAAGTTTAG TTTTAAGGGC
GAGGTGCTAA TTAAGTTAGA TTCCGACGAC CCTGAAATGT ATGAAGAAAT GGAATCAGTA
TTTATTGCCT TAGGCAATAA TCTGGTTCCT TTTTTTATTG AAAAGAGCAC TTTACACAAG
TCGGATTTAT TGCGCGTGAA GTTTGAAGAG ATAGAAACTG AGGCTGATGC AGAAGCTCTA
CTGAGACACA AAATATATTT ACCTCTTGCG GTATTGCCTA AACTATCGGG GAATAAGTTT
TATTACCACG AAGTGATAGG GTTTCAGGTG GAAGATGTGC ACTACGGAGT AGTAGGGAAA
ATAGTTGGAA TAAACGACAG TACTTCTCAA GCGTTATTTG AAATTGAGAA TGAGAACGGA
AATGAGATAC TTATTCCTAT GGCTGATGAG TTTATTGAGA AGATAGATAG AGCCCACAAG
AAAATTATTG TAAAAACCCC AGAAGGGCTT ATTGATTTGT ATTTAGAAAA TTAA
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| Protein sequence | MTLKDCFYIG TIVSKFSFKG EVLIKLDSDD PEMYEEMESV FIALGNNLVP FFIEKSTLHK
SDLLRVKFEE IETEADAEAL LRHKIYLPLA VLPKLSGNKF YYHEVIGFQV EDVHYGVVGK
IVGINDSTSQ ALFEIENENG NEILIPMADE FIEKIDRAHK KIIVKTPEGL IDLYLEN
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