| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0101 |
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| Symbol | |
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| ID | 8366503 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 121946 |
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| End bp | 122971 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644982520 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | YP_003140227 |
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| Protein GI | 256818948 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATACAAA ACGACTTATT CTTAAGAGTA CTCAACGGTG AGGTTACTGA ACGACCGCCT
GTGTGGATGA TGCGTCAAGC AGGACGTTAT TTGCCCGAAT TTAGAGCTTT ACGCGATAAA
TACGACTTCT TTACGCGCTG TCAGACACCG GAGCTGGCTG CGGAAATCAC CGTACAACCG
GTAGATATAG TAGGGGTAGA TGCTGCCATA TTGTTTTCGG ACATATTGGT AGTGCCTCAG
GCTATGAATA TAGAAGTAGA GATGAAAAAA GGCGTGGGAC CGTGGTTGCC AAAGCCTATC
CGTACGGCTA AAGATGTGGA ACAAGCGATT GTGCCTAATA TTGAAGAGCG TTTGGGCTAC
GTAATGGAGG CAGTAAAGCT CACTAAGCAA ATGCTAAACA ATCGTGTGCC CTTAATTGGC
TTTGCAGGTT CGCCTTGGAC GATTTTCTGT TATGCGGTGG AAGGCTCAGG TTCACGTGAT
TTTTCGACGG CTAAGGAGCT TTGTTTTACG CAGCCTTCGG TAGCACACAG CTTATTGCAA
AAGATTACTG ACACAACGAT TCTTTACCTA AAAGAAAAAG TAAAAGCAGG GGTAGATGCC
GTACAGCTTT TTGATAGCTG GGGAGGAGTG TTAGCTCCTG ACGACTATCG CACATTCTCG
TGGCAATACC TCAACCAAAT AGTAGAAGCT CTTGCTCCTT TTACCAAAGT GATTGTCTTC
GCGAAAGGCT GTTGGTATGC TTTGCCTGAA ATGGCAACTT CTAATGCAGC TGCTTTGGGT
GTGGACTGGA CGTGCGCCCC TGAAATAGCG CGCGAACTTA CAAGAGGTAA AAAAGTATTA
CAAGGTAACT TCGACCCCTC ACGACTCTTA GCACCTCCTG CCGAAATCAA ACAGAAGGTG
AAAGAGATGA TAGATGCTTT TGGAAAAGAC CATTATATCG CTAACTTAGG GCACGGTATC
TTACCTAATG TGCCCGTAGA AAACGCTATT GCTTTTGTAG AGGCAGTAAA ATCCTATCGC
TTATAA
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| Protein sequence | MIQNDLFLRV LNGEVTERPP VWMMRQAGRY LPEFRALRDK YDFFTRCQTP ELAAEITVQP
VDIVGVDAAI LFSDILVVPQ AMNIEVEMKK GVGPWLPKPI RTAKDVEQAI VPNIEERLGY
VMEAVKLTKQ MLNNRVPLIG FAGSPWTIFC YAVEGSGSRD FSTAKELCFT QPSVAHSLLQ
KITDTTILYL KEKVKAGVDA VQLFDSWGGV LAPDDYRTFS WQYLNQIVEA LAPFTKVIVF
AKGCWYALPE MATSNAAALG VDWTCAPEIA RELTRGKKVL QGNFDPSRLL APPAEIKQKV
KEMIDAFGKD HYIANLGHGI LPNVPVENAI AFVEAVKSYR L
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