Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_0090 |
Symbol | miaA |
ID | 8366492 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | - |
Start bp | 111585 |
End bp | 112523 |
Gene Length | 939 bp |
Protein Length | 312 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 644982509 |
Product | tRNA delta(2)-isopentenylpyrophosphate transferase |
Protein accession | YP_003140216 |
Protein GI | 256818937 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0324] tRNA delta(2)-isopentenylpyrophosphate transferase |
TIGRFAM ID | [TIGR00174] tRNA isopentenyltransferase (miaA) |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.376959 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCATA AAAAAATACT TTTGAGTGTG GTAGGACCTA CTGCTATTGG AAAAACACGA ATGGCTATAG CCTTAGCACA ACACTTCGGT ACTGAAATCA TCTCTTGCGA CTCACGACAG TTTTTTAAGG AGCTTTCTAT AGGCACAGCG GTTCCTTCGC CCTATGAATT GGCTCAGGCA AAGCACCATT TCATTCAGCA TAAATCTATT TTTGAGCCTT ATTCGGTAGG CGATTTTGAG CGCGATGCTA TTAGCTTGCT CAACACACTT TTTAGAACTC ACGATGTGGT AGTAATGGTA GGAGGAAGTG GGCTTTATGC TAATGCAGTG CTCAGAGGGT TAGATGATTT TCCTGAAACC GATGAACAGA TAAGAAAAGA GCTGAATGCG CAGTATAAAG CAGAAGGCAT TGTTTTTTTG CAACAAAAGC TAAAAACTTT AGACCCTGTG CAATACGAGA AAATAGATAC AAATAATCCG CAACGAATGA TACGCGCCTT AGAAGTGTGT ATGGTAGCAG GGAAGCCTTA TTCGTCTTTT TTAAACAAAA AAGAAACGGT GAGAGACTTT GAGAGCATAC AAGTAGGACT TACGGCAGAA CGAGAGGTGC TTTACAATCG CATTGATGAG CGAGTAGAGC AAATGCTCGA AGGTGGGTTG CTTATAGAAG CACAAGATAT GTTTCCGCAC AAGGAACTCA ATGCTTTGCA GACAGTAGGC TACAAGGAGT TATTTGCTTT TTTTGAAGGG AAGACCTCGT TTGGCTTTGC GATAGAGGAA ATTAAGAAGA ACACCCGTCG ATTTGCCAAG CGACAATTTA CGTGGTTTCA TAAAGATAGT TCTATACATT GGTTTGATTA TAGGACAACG GTGGAGGAAG TTCTTCAGAA AACCACAATG CAGAAATGCC AATTATTGAA GGTAAAAGAT AAAAGGTAA
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Protein sequence | MKHKKILLSV VGPTAIGKTR MAIALAQHFG TEIISCDSRQ FFKELSIGTA VPSPYELAQA KHHFIQHKSI FEPYSVGDFE RDAISLLNTL FRTHDVVVMV GGSGLYANAV LRGLDDFPET DEQIRKELNA QYKAEGIVFL QQKLKTLDPV QYEKIDTNNP QRMIRALEVC MVAGKPYSSF LNKKETVRDF ESIQVGLTAE REVLYNRIDE RVEQMLEGGL LIEAQDMFPH KELNALQTVG YKELFAFFEG KTSFGFAIEE IKKNTRRFAK RQFTWFHKDS SIHWFDYRTT VEEVLQKTTM QKCQLLKVKD KR
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