| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0053 |
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| Symbol | |
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| ID | 8366455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | - |
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| Start bp | 64990 |
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| End bp | 71217 |
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| Gene Length | 6228 bp |
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| Protein Length | 2075 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 644982472 |
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| Product | YD repeat protein |
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| Protein accession | YP_003140179 |
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| Protein GI | 256818900 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.192291 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTAAGC ATATGAAAAA GTTGTTATTA TTACTATCTG TTTGTTATAC GTTAGTTTGC
TTTTCACAAG AAGAATTACC CTATAGAACT ATTCCGTGGG AATCTTTCAG TGAAGGCAAT
ACTTATACTC CTACAGAAAC AATGCTTTCT TCGGGGAGCA GTATTACCGC AAGAGGAGGA
GGTGCTAATA CTGTGGGCTT GACTACGGGT GAACTGAGTG TATCAGGCAC AGGTGCTGCA
GTGTATACCG TGCCTATTGT GGTACCTAAA GGCATAGGAG GTGTAGCACC TACGTTGGCA
TTGACCTACA ATAGCCAGAG TGGTAACGGC ATTGCGGGTT ACGGTTGGCA CTTAGCGGGG
CTTTCGGTGA TAAGCAGAGT GGGGAGCACA ATGTATCACA ACGACAACAT TACCGAAGTA
AACCTTACGG AAACAGACCA GTTTGCGTTG GACGGACAGC GATTGATGCT GAAAGAAGGC
AAACACGGCG AGAGTGGATC GGTGTACGAG ACTGAAACTT TCTCGCAAGT ACGTATTAAG
GCAGTGGGCA AGAGCAAGAA CGTGGCTTTT GGACCTGATT ACTTTGAGGT ACTTTACCCT
GATGGCTCTA AAGCGTATTA TGGAAGAAAT CACAAGGGAA ATAGAGCACA AAGTGTATTG
GAATATGCAC TTTCTCATTG GGAGAATGCA CAAGGGATAA GCATTGAGTA TTATTACACC
ATAGAAAATA ACCATATGGT TATAAGCCGT ATTGAATATG GAGGAAAGGA CAATGCGCTT
CATACGGTTA GTTTTAAATA TATAGCTCGT AATCGTACAG AGAATGCCTA TGTAGGAGGT
ATAGCGTCTA TAAACGATAA GATATTATCG GCTATTATTG TAACTGACAA TAATACCCCT
TATAGAGATT ATGAACTGAA ATACAACGTT AATAGTTTAG ATTATAATCG ATTGGTATCA
GTAGAGGAAG GTGTAGAAGG AGAAAAACGC ACTCCAATAA TTTTTCAATA CTGGGATACC
GTAAACCCTA ATGAAGAGTT TAAAATAAAT AAAGGTGCTA TAGGGCAAAC AACAATATCA
CAGGTAAACA ATGTTAATTC TACTGTTGTG CCTCTTGACC TTAATGGCGA TAATTATACC
GATTTTGTAC TATATCCTAC TACAGGAGAA AGAGCTAACA GAGATTTATA TATTTTTGAG
GAATATAGAA GAACACCTTT ATACTCTCCT ATAGAGGTTG ATATGGGACA CACTTTTAAG
GAACTATTTC CTGTGAAGAT TCTTAAAAAA GATATGCTTG TTTCTAGTAT TTCTAAGGGG
CAAGGCATTG TAACTGCCCA GTATGAAGAA AACAGGATAT TACTAAGACC TTATATAAGA
GGGACAAACT CTTTAATTCC TAAGGAGCCA ATACGTTTCT ATTTTCCTGC TTATCCTAAT
GAAGAAGAGC ATTGTAGAGG TTTTGCGAGC GATGTTCGCC CCGTACCTCC TATAACTTAT
GACTTATACA ATAAAGATTT CAAATTAGTA TCGGGAGACT TTACTGGCGA TGGGCTTACT
AATATTATAG CGATTGAATA TCCTTTTAAA ATATGTGAGT CACGTATGAA AAGGTTGGTA
GAACAAAGAG AAACGATATG TACTTGTGAA TATAGAGATG TAGGGGGAGG AGTTCATCTT
ATAGATTTAA ATCAAGAACT AAGATATAAT AGCCACACTA AGAAAATAGG ATATGTATAT
TTACAAAAAG GTGATTTAGT TTGGACAATG GATGTAAATG GTAATGGGAA AACCGATATT
ATTGTCATTA CTAAAGGAGC AATGTACATA TATGAAATAA CAAAGCCTTA TCCTTATGAC
TTAAAGCTTA TCAATCAGTA TCACAGTCCC TATATAAAAG TAGATGAGTT TCACCCTATA
GCTGGTGATT TTAATGGAGA TGGAAAAATA GACTTTCTGC TTCCTACTGC TGATAGGAGT
AATCGATTTG AGTTATTAGT TAATGAAGGG ATACGTTTTT TTCCTTTAGA ACAATATTTT
GACTTTACTT TTAATAAACT ATATGTAGAA AAAGTTATAG TTCGTAGAAA AATTTTTCAT
ACAACCTATG GCTATCATAA GCATAGCTAT AGCCTTATAC CTATTGATAT TAACAGTGAT
GGAAAGACTG ATATTATACA ATATTATACT CTAATAGATC ACAAAGGAGA CGAAATAGTA
AGTACTTTTA ATGTGTTTGC GAATGTATTT GAGGTAGGGA GGCTTTCTTT TAAGAAAAAA
GGAAAAACTC TTGCTTTGGA AGGAGGAAAT CAGGCAAGAC CTCATATCAT ATTCTCGTCA
GTTGATGAGC GCGATAGGAT CATAGATATC TCACTCTTTT CAGGAAATAA GATTAGGAAC
TACTCTTTAT ATGAAAACAA TAGAGAAGAT ATGTTATTGA GAAAGGTGAA TAATGGAGAG
ACAAACTACT CAGTTACCTA TCAACCAATG GCTACTGTTT CTAATAAAGG GAAGGATATG
TCAGTTTACT ATGGCAAACA AGAAACTGAA AGATATCCTT ATATGACTAT TAGCAATATA
CGTTCTATAG GATTAGTTGC TAAATTAGAA CGAGAAGGTA TAAAAATTCC TAAAGCAGAG
CGTAGGTTTG CTTATTATAA TGCTGTTAGC CATATGCAGG GGTTAGGTTT TCTTGGTTTT
TCGGGTATTG GAAGTACAGA TTGGTATGAG CCTAATGACC AATATGGATT AGGGAAAACT
TTATACCAGC ATAAAGTGAT GAACCCACAT TTAAGAGGAG CTTTGACAGA AGAATACACC
TTAGAAGGAA TGCGGTATGA TATTATAGAA TCAACACTTA AAGAACAAAA TATACAGCAT
ACCATTTACC AATACAATGA CCTTAGTCCT AGCAAGGTCT TTAAACTACA ACTTACCCAG
CAAACCACTG AAGATAAACT TTCGGGACTA ACGACTACCA ATAATTTTAG TTATGATGCG
GACGGTAACC TCACGGAACA ACGCACCCAA ACGGACGGCT ATAGCCAAAG TACGCGCGTG
AGCTATTTAC CAAAGAGCGA GAGTCCGTAT TTTTCAGGCT TACCTCAACA GAAAGAGACG
ACCACCACCT TGTCAGGCGA TAGTTTTAGC ACCGCTGAAA CTTTTGCTTA TGAGAAAGGT
TTGCTCACTA CCCATAAAAC CCAAGGCAAT GGTACGGGTT GGCGTACTAC TTCTTATGGT
TATGATGAGT ACGGCAACGT AATAGAACAA ACTGCCACTG CTGAAGACGG ACAACAACGT
ACCGAACGCT ATACCTATGA CCCAAGCCAC CGTTTTGTAA CAGCTCATAC CGACCACGAA
GGACAGGTAA CCAAGTTTAG CTATAACAAT AGAGGTCTGC TGGAAAGCGA AACGACTCCA
TTAGGACAAA GTACTCTTTA CGCCTATGAC CTTTGGGGTA GACCTACCCA AACCACGAAT
TTCTTAGGCA AGAAAACCAC GATGCGCTAT AGCTTTGACG GAAGTATTTT TAAGAACATT
ACCGAGAACG AAGAAGGTGC TTACAGTGCA GAGAGCTATA ACACTTTAGG CTGGTTGTTA
GAAAAAGAGA GTAACGATGC TTTTAACAAC CACTATGCGG TTAGCTACGA GTACGACGGT
ATAGGGCAAC TAATGAGCGT GAGTGCCCCT CACCCAGGAG GTGCTTCTCA AAAGGCGAAG
AGGACAGAAT ACGATGTATA TGGACGACCT ACCACTATCA CCAGTCCCGA AGGTAAAATA
ACCCGTTTTA CCTACGACAA ACTCAAAACT ACCGCTGATG ACGGACAGCA ACAAGTGATA
AGCACCCGCG ATGCCCAAGG TAACATTGTA GAACACCAAG ATACGGGCGG TACTGTGCGC
TATAGCTACT TTGCCAATGG TAGCTTAAAA ACAGCCGACT ATGGAGGTGC CATACAAAAG
ATAACCCAAG ACGGCTGGGG ACGCAAAACA AGCCTTACCG ACCCTTCGGC AGGGCGATAT
ACCTATCAAT ACGACACGTG GGGTAACCTC ACCGAAGAAA CGACCCCTAA GGGTAAGACC
ACCTTTAGCT ATGAACAAGG TACCGACCGC CTGAGTGAAA AACATATTAC GGGCGATTAT
ACCGATATGC ACATACGCTA TACTTATAAC GCCGACAAAC TGCTCACCCA AATAGACAAC
CAAAACAAAG ACGGCAATAA CGACAGTTAC CGCTATGAGT ATAACGGACT CAAACAATTG
GTTCAAACTA CCGAAACCAA CCCGCAAGCG GTATTTACTA AAAACTATAC TTATGATGCC
TTTGGACGTG TACAACAAGA AACCACTACC GCCCAAACGG CAGGCAAGCG TGTGAGCAGT
GCCGTGCAAT ACCGCTACGA GAATGGGGAA CTCATAGAAA TGAAAACAGC CAGCGGAGCG
ACCCTTTGGA AACTGAGCGC AAGTAACGAA TACGGACAAC CGCTGAGCCT TCACAAAGGA
AAGACCCAAG AGAATTTCCA GTACAACAGT CATTTTCCTA AAATGCAAAC TGTACAACGG
GAAGATACTC CGCTGAACGT ATTGCAATAC GATTTCAACC CACAACGAGG ACTGCTGAAT
CATCGTACTT ATAGTTTTTA TAACCAAAAA GAAGAATTTG CGTATGACAC CACCGACCGC
CTCACCCGCT GGGGCAATGC CACCCACCAA TACGACGAAC GGGGTCGCAT TACCGAAAAC
AGTGCCATAG GTACCTATGA ATACACACGC AATGGCTACC AACAGCAAAA ACTCACTACT
AATGAAGCAG GTGAGACGTA TTTAGAAAAA CACCCACTGC CCACTGTAAG GTATAACGCT
TTTAAAGCCC CAGAGCAGAT ATATGTAAAG GATAAAGAGC GAATAAGCTA TGAATACAAC
GCCTTTGGTG AACGTTCACA TTGCTATTAT GGCAATGCCG AAGTAGAAAA AGCCAAACGC
CCAATGCTTA AACACTACAG CCACGACGGT AGTGTAGAGA TAGTATGTAA CAAAACCGAT
AACAGCACCA AGTTTATATT TTACTTAGGC GGTGATGCCT ATAGTGCTCC TGCTATACTC
ATTTCGGACG GAGAAACCTC AAAACTCTAT TACCTACACC GCGACTATCT GGGAAGTATT
GTAATGCTCA CTGATGAGAA CGGCAATATA GCTGAAAGAA GCCATTTTGA CCCTTGGGGA
CAACCCATAA AAGTAGAAGA TGGAGCGGGA AAAGTGTTAC AAGGTTTAAC TTTATTAGAT
AGAGGTTTTA CAGGGCACGA ACACCTGCAA ACGGTAGGAC TTATCCATAT GAATGGACGG
TTGTACGACC CTGCGTTACA CCGTTTCTTA CAACCCGATA ACTATGTACA AGACCCTTTT
AATACTCAAA ATTTTAATAG ATATGGGTAC TGTTTGAACA ACCCACTGGT GTATGTGGAT
GAGAATGGGG AGTTTCTATT AGGAACTATC TTTACGCATA TGTGGGAAAC AGTTGAAAAT
GTTTTTACTC ACGGAGTTAA TTTTCATCAT TATAGTTATG AAAAAACGGA AAGAGCGTGG
GAAATAGACA AAGGTATGTT TACAGGTGAT TTTGGGCAGA TATTGAACAA GTGGACTTGG
GGAGCTGTAA ATACGCTTGC AGGTAACTTC TTAGGACAAG AACTTAACCG TTGGGGGTTG
GTGAATGGTG TTTCACATTT AGATGGTGCT GTAGCATTGA GTGGCGTAAA TTCAGAAGGG
AGAGCATTTA CTATTGGAAA CTATATTTTT GGACCGGATA ATTTTAAAGC AGATTGGAGA
GACCATTTAT TTGTGCACGA ATATGGACAC TATATACAAA GCCAATACTT TGGAGCTTTT
TATTTGCCTA TTGTAGCTAC CACAAGTTTA GCAAGTACTC AAAAAATAGG AGGTTCAGAT
CATAGTACAC GTTGGTTTGA GGTACAAGCC AGCAAAATGG GAGCAGAGCA TTTTGATAGA
TTATATGGCT CTGGCGCAAA AGGATATAAG AAAGGAAGTT CTGACTTTTT TGATAAGGAA
TCTTTTGTGA ATGGAAAATG GTCTCCCTAC ATAAATCCAA GATTAGGATC TTCTTACCAA
GGTAGCAAAG GGAATCCTAT TGATGGAGCT CGTTTTACAG GTTGGGATGT AGCAGTTCCT
ATTTTAACCC CTATTGTAAT TAGTACAGTA TTAAAATTAA TATTTTAG
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| Protein sequence | MIKHMKKLLL LLSVCYTLVC FSQEELPYRT IPWESFSEGN TYTPTETMLS SGSSITARGG
GANTVGLTTG ELSVSGTGAA VYTVPIVVPK GIGGVAPTLA LTYNSQSGNG IAGYGWHLAG
LSVISRVGST MYHNDNITEV NLTETDQFAL DGQRLMLKEG KHGESGSVYE TETFSQVRIK
AVGKSKNVAF GPDYFEVLYP DGSKAYYGRN HKGNRAQSVL EYALSHWENA QGISIEYYYT
IENNHMVISR IEYGGKDNAL HTVSFKYIAR NRTENAYVGG IASINDKILS AIIVTDNNTP
YRDYELKYNV NSLDYNRLVS VEEGVEGEKR TPIIFQYWDT VNPNEEFKIN KGAIGQTTIS
QVNNVNSTVV PLDLNGDNYT DFVLYPTTGE RANRDLYIFE EYRRTPLYSP IEVDMGHTFK
ELFPVKILKK DMLVSSISKG QGIVTAQYEE NRILLRPYIR GTNSLIPKEP IRFYFPAYPN
EEEHCRGFAS DVRPVPPITY DLYNKDFKLV SGDFTGDGLT NIIAIEYPFK ICESRMKRLV
EQRETICTCE YRDVGGGVHL IDLNQELRYN SHTKKIGYVY LQKGDLVWTM DVNGNGKTDI
IVITKGAMYI YEITKPYPYD LKLINQYHSP YIKVDEFHPI AGDFNGDGKI DFLLPTADRS
NRFELLVNEG IRFFPLEQYF DFTFNKLYVE KVIVRRKIFH TTYGYHKHSY SLIPIDINSD
GKTDIIQYYT LIDHKGDEIV STFNVFANVF EVGRLSFKKK GKTLALEGGN QARPHIIFSS
VDERDRIIDI SLFSGNKIRN YSLYENNRED MLLRKVNNGE TNYSVTYQPM ATVSNKGKDM
SVYYGKQETE RYPYMTISNI RSIGLVAKLE REGIKIPKAE RRFAYYNAVS HMQGLGFLGF
SGIGSTDWYE PNDQYGLGKT LYQHKVMNPH LRGALTEEYT LEGMRYDIIE STLKEQNIQH
TIYQYNDLSP SKVFKLQLTQ QTTEDKLSGL TTTNNFSYDA DGNLTEQRTQ TDGYSQSTRV
SYLPKSESPY FSGLPQQKET TTTLSGDSFS TAETFAYEKG LLTTHKTQGN GTGWRTTSYG
YDEYGNVIEQ TATAEDGQQR TERYTYDPSH RFVTAHTDHE GQVTKFSYNN RGLLESETTP
LGQSTLYAYD LWGRPTQTTN FLGKKTTMRY SFDGSIFKNI TENEEGAYSA ESYNTLGWLL
EKESNDAFNN HYAVSYEYDG IGQLMSVSAP HPGGASQKAK RTEYDVYGRP TTITSPEGKI
TRFTYDKLKT TADDGQQQVI STRDAQGNIV EHQDTGGTVR YSYFANGSLK TADYGGAIQK
ITQDGWGRKT SLTDPSAGRY TYQYDTWGNL TEETTPKGKT TFSYEQGTDR LSEKHITGDY
TDMHIRYTYN ADKLLTQIDN QNKDGNNDSY RYEYNGLKQL VQTTETNPQA VFTKNYTYDA
FGRVQQETTT AQTAGKRVSS AVQYRYENGE LIEMKTASGA TLWKLSASNE YGQPLSLHKG
KTQENFQYNS HFPKMQTVQR EDTPLNVLQY DFNPQRGLLN HRTYSFYNQK EEFAYDTTDR
LTRWGNATHQ YDERGRITEN SAIGTYEYTR NGYQQQKLTT NEAGETYLEK HPLPTVRYNA
FKAPEQIYVK DKERISYEYN AFGERSHCYY GNAEVEKAKR PMLKHYSHDG SVEIVCNKTD
NSTKFIFYLG GDAYSAPAIL ISDGETSKLY YLHRDYLGSI VMLTDENGNI AERSHFDPWG
QPIKVEDGAG KVLQGLTLLD RGFTGHEHLQ TVGLIHMNGR LYDPALHRFL QPDNYVQDPF
NTQNFNRYGY CLNNPLVYVD ENGEFLLGTI FTHMWETVEN VFTHGVNFHH YSYEKTERAW
EIDKGMFTGD FGQILNKWTW GAVNTLAGNF LGQELNRWGL VNGVSHLDGA VALSGVNSEG
RAFTIGNYIF GPDNFKADWR DHLFVHEYGH YIQSQYFGAF YLPIVATTSL ASTQKIGGSD
HSTRWFEVQA SKMGAEHFDR LYGSGAKGYK KGSSDFFDKE SFVNGKWSPY INPRLGSSYQ
GSKGNPIDGA RFTGWDVAVP ILTPIVISTV LKLIF
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